| Literature DB >> 27999813 |
Xiao-Juan Zhu1, Ya-Jun Lin1, Wei Chen1, Ya-Hui Wang1, Li-Qiang Qiu1, Can-Xin Cai1, Qun Xiong1, Fei Chen1, Li-Hui Chen1, Qiong Zhou1, Jiang-Hua Li2.
Abstract
Nicotinamide N-methyltransferase (NNMT) catalyzes the methylation of nicotinamide. Our previous works indicate that NNMT is involved in the body mass index and energy metabolism, and recently the association between a SNP (rs694539) of NNMT and a variety of cardiovascular diseases was reported. At present, more than 200 NNMT single nucleotide polymorphisms (SNPs) have been identified in the databases of the human genome projects; however, the association between rs694539 variation and hyperlipidemia has not been reported yet, and whether there are any SNPs in NNMT significantly associated with hyperlipidemia is still unclear. In this paper, we selected 19 SNPs in NNMT as the tagSNPs using Haploview software (Haploview 4.2) first and then performed a case-control study to observe the association between these tagSNPs and hyperlipidemia and finally applied physiological approaches to explore the possible mechanisms through which the NNMT polymorphism induces hyperlipidemia. The results show that a SNP (rs1941404) in NNMT is significantly associated with hyperlipidemia, and the influence of rs1941404 variation on the resting energy expenditure may be the possible mechanism for rs1941404 variation to induce hyperlipidemia.Entities:
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Year: 2016 PMID: 27999813 PMCID: PMC5141537 DOI: 10.1155/2016/7521942
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Demographic and clinical characteristics of hyperlipidemic patients and controls.
| Controls ( | Patients ( | Significance | |
|---|---|---|---|
| Age (years) | 71.48 ± 7.90 | 49.59 ± 8.81 |
|
| Gender (male/female) | 175/141 | 194/201 |
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| BMI (kg/m2) | 22.63 ± 4.51 | 24.98 ± 4.23 |
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| Triglycerides (mg/dL) | 110.88 ± 57.64 | 267.66 ± 129.71 |
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| Total cholesterol (mg/dL) | 196.97 ± 35.89 | 251.97 ± 57.15 |
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| LDL cholesterol (mg/dL) | 119.06 ± 30.42 | 161.528 ± 51.22 |
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| HDL cholesterol (mg/dL) | 57.14 ± 12.87 | 47.72 ± 15.41 |
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| Blood glucose (mmol/L) | 5.14 ± 1.18 | 5.37 ± 1.25 |
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| Diabetes, | 0 (0%) | 76 (19.24%) |
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| Hypertension, | 0 (0%) | 55 (13.92%) |
|
BMI, body mass index; LDL, low density lipoprotein; HDL, high density lipoprotein.
Figure 1Positions of the 19 tagSNPs in relation to NNMT.
Frequency distributions of the hyperlipidemia cases and controls.
| SNPs | Allele |
| Genotype | HWE |
| ||||
|---|---|---|---|---|---|---|---|---|---|
| rs2511153 | Case | C: 525 (0.68) | T: 253 (0.33) | 0.035 | CC: 172 (0.44) | CT: 181 (0.47) | TT: 36 (0.09) | 0.095 | |
| Ctrl | C: 390 (0.62) | T: 238 (0.38) | CC: 116 (0.37) | CT: 158 (0.50) | TT: 40 (0.13) | 0.22 | |||
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| rs505978 | Case | A: 443 (0.59) | G: 309 (0.41) | 0.067 | AA: 131 (0.35) | AC: 181 (0.48) | CC: 64 (0.17) | 0.115 | |
| Ctrl | A: 338 (0.54) | G: 288 (0.46) | AA: 86 (0.28) | AC: 166 (0.53) | CC: 61 (0.20) | 0.23 | |||
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| rs694539 | Case | A: 262 (0.35) | G: 494 (0.65) | 0.665 | AA: 54 (0.14) | AG: 154 (0.41) | GG: 170 (0.45) | 0.005 | |
| Ctrl | A: 210 (0.34) | G: 416 (0.67) | AA: 25 (0.08) | AG: 160 (0.51) | GG: 128 (0.41) | 0.01 | |||
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| rs12285641 | Case | C: 457 (0.58) | T: 325 (0.42) | 0.090 | CC: 139 (0.36) | CT: 179 (0.46) | TT: 73 (0.19) | 0.010 | |
| Ctrl | C: 390 (0.63) | T: 230 (0.37) | CC: 113 (0.37) | CT: 164 (0.53) | TT: 33 (0.11) | 0.02 | |||
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| rs11214926 | Case | A: 242 (0.32) | G: 514 (0.68) | 0.013 | AA: 48 (0.13) | AG: 146 (0.39) | GG: 184 (0.49) | 0.001 | |
| Ctrl | A: 162 (0.26) | G: 464 (0.74) | AA: 12 (0.04) | AG: 138 (0.44) | GG: 163 (0.52) | 0.01 | |||
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| rs7109984 | Case | C: 680 (0.87) | T: 102 (0.13) | 0.652 | CC: 290 (0.74) | CT: 100 (0.26) | TT: 1 (0.00) | 0.271 | |
| Ctrl | C: 534 (0.86) | T: 86 (0.14) | CC: 228 (0.74) | CT: 78 (0.25) | TT: 4 (0.01) | 0.35 | |||
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| rs10891644 | Case | G: 509 (0.65) | T: 269 (0.35) | 0.109 | GG: 158 (0.41) | GT: 193 (0.50) | TT: 38 (0.10) | 0.011 | |
| Ctrl | G: 428 (0.70) | T: 188 (0.31) | GG: 155 (0.50) | GT: 118 (0.38) | TT: 35 (0.11) | 0.09 | |||
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| rs55675450 | Case | A: 119 (0.15) | G: 659 (0.85) | 0.976 | AA: 13 (0.03) | AG: 93 (0.24) | GG: 283 (0.73) | 0.987 | |
| Ctrl | A: 96 (0.15) | G: 534 (0.85) | AA: 11 (0.04) | AG: 74 (0.24) | GG: 230 (0.73) | 0.11 | |||
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| rs2244175 | Case | A: 404 (0.53) | G: 352 (0.47) | 0.117 | AA: 103 (0.27) | AG: 198 (0.52) | GG: 77 (0.20) | 0.115 | |
| Ctrl | A: 308 (0.49) | G: 318 (0.51) | AA: 64 (0.20) | AG: 180 (0.58) | GG: 69 (0.22) | 0.01 | |||
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| rs2847492 | Case | A: 264 (0.35) | G: 492 (0.65) | 0.882 | AA: 51 (0.14) | AG: 162 (0.43) | GG: 165 (0.44) | 0.179 | |
| Ctrl | A: 221 (0.35) | G: 405 (0.65) | AA: 33 (0.11) | AG: 155 (0.50) | GG: 125 (0.40) | 0.14 | |||
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| rs2852432 | Case | C: 399 (0.53) | T: 357 (0.47) | 0.022 | CC: 101 (0.27) | CT: 197 (0.52) | TT: 80 (0.21) | 0.051 | |
| Ctrl | C: 369 (0.59) | T: 257 (0.41) | CC: 102 (0.33) | CT: 165 (0.53) | TT: 46 (0.15) | 0.11 | |||
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| rs4646335 | Case | A: 487 (0.64) | T: 269 (0.36) | 0.011 | AA: 161 (0.43) | AT: 165 (0.44) | TT: 52 (0.14) | 0.004 | |
| Ctrl | A: 360 (0.58) | T: 264 (0.42) | AA: 95 (0.30) | AT: 170 (0.55) | TT: 47 (0.15) | 0.04 | |||
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| rs3819100 | Case | A: 431 (0.57) | G: 325 (0.43) | 0.005 | AA: 120 (0.32) | AG: 191 (0.51) | GG: 67 (0.18) | 0.012 | |
| Ctrl | A: 309 (0.49) | G: 317 (0.51) | AA: 70 (0.22) | AG: 169 (0.54) | GG: 74 (0.24) | 0.16 | |||
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| rs2256292 | Case | C: 327 (0.43) | G: 439 (0.57) | 0.053 | CC: 71 (0.19) | CG: 185 (0.48) | GG: 127 (0.33) | 0.063 | |
| Ctrl | C: 236 (0.38) | G: 392 (0.62) | CC: 38 (0.12) | CG: 160 (0.51) | GG: 116 (0.37) | 0.13 | |||
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| rs2301128 | Case | A: 100 (0.13) | G: 678 (0.87) | 0.739 | AA: 9 (0.02) | AG: 82 (0.21) | GG: 298 (0.77) | 0.924 | |
| Ctrl | A: 77 (0.12) | G: 551 (0.88) | AA: 6 (0.02) | AG: 65 (0.21) | GG: 243 (0.77) | 0.50 | |||
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| Case | C: 391 (0.53) | T: 349 (0.47) |
| CC: 117 (0.32) | CT: 157 (0.42) | TT: 96 (0.26) |
| |
| Ctrl | C: 268 (0.43) | T: 358 (0.57) | CC: 50 (0.16) | CT: 168 (0.54) | TT: 95 (0.30) |
| |||
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| rs2155806 | Case | C: 78 (0.10) | T: 700 (0.90) | 0.346 | CC: 7 (0.01) | CT: 64 (0.17) | TT: 318 (0.82) | 0.322 | |
| Ctrl | C: 73 (0.12) | T: 557 (0.88) | CC: 4 (0.01) | CT: 65 (0.21) | TT: 246 (0.78) | 0.90 | |||
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| rs1941399 | Case | A: 119 (0.16) | C: 637 (0.84) | 0.550 | AA: 7 (0.02) | AC: 105 (0.28) | CC: 266 (0.70) | 0.525 | |
| Ctrl | A: 106 (0.17) | C: 520 (0.83) | AA: 10 (0.03) | AC: 86 (0.28) | CC: 217 (0.69) | 0.68 | |||
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| rs4646337 | Case | A: 680 (0.88) | G: 94 (0.12) | 0.748 | AA: 296 (0.77) | AG: 88 (0.23) | GG: 3 (0.01) | 0.250 | |
| Ctrl | A: 557 (0.88) | G: 73 (0.12) | AA: 248 (0.79) | AG: 61 (0.19) | GG: 6 (0.02) | 0.33 | |||
Case, the hyperlipidemia group; Ctrl, the control group; HWE, P value of Hardy-Weinberg equilibrium test on the control group; the values of allele and genotype are the number of individuals (frequency).
Genotype effects and genetic models of rs1941404 variation.
| Model | Genotype | Case | Control | OR (95% CI) |
|
|
|---|---|---|---|---|---|---|
| Recessive | CC | 117 (0.70) | 50 (0.30) | 2.432 (1.574, 3.534) |
| −0.54 |
| TT+CT | 253 (0.49) | 263 (0.51) | ||||
| Dominant | CC+CT | 274 (0.56) | 218 (0.44) | 1.244 (0.890, 1.738) | 0.202 | |
| TT | 96 (0.50) | 95 (0.50) | ||||
| Additive | CC | 117 (0.70) | 50 (0.38) | 2.316 (1.497, 3.581) |
| |
| TT | 96 (0.50) | 95 (0.59) | ||||
| Codominant | CT | 157 (0.48) | 168 (0.52) | 0.636 (0.470, 0.861) |
| |
| CC+TT | 213 (0.59) | 145 (0.41) |
Case, the hyperlipidemia group; Ctrl, the control group; the values of the case and control are the number of individuals (frequency) from different genotypes; OR, odds ratio; CI, confidence interval; h (dominance degree) = ln(ORco)/ln(OR), ORco, OR of the codominant model; OR, OR of the additive model.
Figure 2Effects of rs1941404 variation on the physiological indicators. (a) Body fat percentage; (b) resting energy expenditure rate; (c) unit surface area resting energy expenditure rate; (d) respiratory quotient. CC, the genotype CC (n = 28); CT+TT, the genotypes (CT+TT) (n = 121). Error bars, ± standard deviation. P < 0.05 compared to CT+TT.