| Literature DB >> 24222859 |
Federica Sentinelli1, Ilenia Minicocci, Anna Montali, Luisa Nanni, Stefano Romeo, Michela Incani, M Gisella Cavallo, Andrea Lenzi, Marcello Arca, Marco G Baroni.
Abstract
Background. Familial combined hyperlipidemia (FCHL), the most common genetic form of hyperlipdemia, is characterized by a strong familial clustering and by premature coronary heart disease. The FCHL locus has been mapped to human chromosome 1q21-q23. This region includes the retinoid X receptor gamma (RXRG), a nuclear factor member of the RXR superfamily, which plays important roles in lipid homeostasis. Objective. To investigate the possible role of the RXRG gene in the genetic susceptibility to FCHL. Methods. Variations in RXRG gene were searched by direct sequencing, and the identified SNPs were genotyped by PCR-RFLP in 192 FCHL individuals from 74 families and in 119 controls. Results. We identified 5 polymorphisms in the RXRG gene (rs1128977, rs2651860, rs2134095, rs283696, and rs10918169). Genotyping showed that the A-allele of rs283696 SNP was significantly associated with FCHL (corrected P, P c < 0.01). Also the alleles of the rs10918169 and of the rs2651860 SNP were more frequent in FCHL subjects compared to those in controls, although not significantly after correction. When the clinical characteristics of the FCHL subjects were stratified by allele carrier status for each SNP, the rs2651860 SNP was significantly associated with increased levels of LDL-cholesterol and of Apo-B in T-allele carriers (P < 0.04). Finally, haplotypes analysis with all 5 SNPs confirmed the significant association of RXRG gene with FCHL. Specifically, the haplotype containing all 3 "at-risk" alleles, significantly associated with FCHL (A-allele of rs283696, G-allele of rs10918169, and T-allele of rs2651860), showed an OR (Odds Ratio) of 2.02, P c < 0.048. Conversely, the haplotype without all these 3 alleles was associated with a reduced risk for FCHL (OR = 0.39, P c < 0.023). The "at-risk" haplotype CTTAG was also associated with higher LDL-C (P < 0.015). In conclusion, variation in the RXRG gene may contribute to the genetic dyslipidemia in FCHL subjects.Entities:
Year: 2013 PMID: 24222859 PMCID: PMC3810489 DOI: 10.1155/2013/517943
Source DB: PubMed Journal: J Lipids ISSN: 2090-3049
Clinical characteristics of FCHL patients and controls.
| Controls ( | FCHL | ||
|---|---|---|---|
| Probands ( | All affected ( | ||
| Age (yrs) | 51.96 ± 12.10 | 47.77 ± 12.47* | 49.81 ± 14.83 |
| Sex (M/F) | 53/66 | 50/24** | 111/81* |
| BMI (Kg/m2) | 24.83 ± 3.69 | 26.47 ± 3.64** | 25.96 ± 3.71* |
| Current smokers, | — | 22 (29.7%) | 54 (28.1%) |
| Hypertension, | 27 (22.7%) | 14 (18.9%) | 37 (19.3%) |
| Blood glucose (mg/dL) | 92.97 ± 18.20 | 89.13 ± 14.64 | 87.98 ± 13.15** |
| Insulin (mUI/L) | 16.76 ± 19.18 | 11.70 ± 8.51 | 11.41 ± 6.86 |
| HOMA index | 3.53 ± 4.14 | 2.59 ± 2.17 | 2.49 ± 1.77 |
| Diabetes, | 4 (3.4%) | 2 (2.7%) | 6 (3.1%) |
| CAD, | — | 11 (14.9%) | 29 (15.1%) |
| Plasma lipids (mg/dL) | |||
| TC | 199.95 ± 37.50 | 252.95 ± 56.07*** | 251.61 ± 46.25*** |
| HDL-C | 56.93 ± 13.60 | 45.95 ± 13.93*** | 48.21 ± 14.42*** |
| TG | 104.81 ± 56.72 | 270.64 ± 131.77*** | 246.91 ± 128.59*** |
| LDL-C | 122.05 ± 32.3 | 155.58 ± 52.5*** | 154.93 ± 46.80*** |
| ApoB | — | 151.09 ± 33.56 | 155.61 ± 30.78 |
Data are reported as means ± SD.
BMI: body mass index; HOMA: homeostasis model assessment calculated according to Matthews et al. [12]; CAD: coronary artery disease; TC: total cholesterol; HDL-C: high density lipoprotein cholesterol; TG: total triglycerides; LDL-C: low density lipoprotein cholesterol; ApoB: apolipoprotein B; SD: standard deviation; FCHL: familial combined hyperlipidemia; M: male; F: female.
Probands were index cases of each 74 FCHL kindred.
*P < 0.05, **P < 0.005, and ***P < 0.001 for comparison between controls and probands or all FCHL patients.
Figure 1Linkage disequilibrium test (D′) of the five SNPs (single nucleotide polymorphisms) in retinoid X receptor-gamma (RXR-gamma) gene. Dark red diamonds represent high association (D′ ≥ 0.87), moderate red represent D′ between 0.83 and 0.81, and light red represent D′ of 0.73. Table shows D′ values.
Genotype and allele frequencies of individual SNPs within RXR-gamma gene in FCHL probands and controls.
| SNPs | Controls ( | Probands ( |
| Fisher's | OR (95% CI) | All affected ( | Fisher's |
|---|---|---|---|---|---|---|---|
| rs1128977 | ( | ( | ( | ||||
| C25464C | 40 (0.41) | 25 (0.36) | 1.28 | 0.53 | 68 (0.38) | 0.17 | |
| C25464T | 40 (0.41) | 35 (0.50) | 90 (0.51) | ||||
| T25464T | 17 (0.18) | 10 (0.14) | 19 (0.11) | ||||
| Allele C | 120 (0.62) | 85 (0.61) | 0.04 | 0.83 | 0.95 (0.61–1.49) | 226 (0.64) | 0.64 |
| Allele T | 74 (0.38) | 55 (0.39) | 128 (0.36) | ||||
| rs2651860 | ( | ( | ( | ||||
| T33538T | 37 (0.35) | 37 (0.51) | 5.47 |
| 85 (0.45) |
| |
| T33538G | 40 (0.38) | 17 (0.23) | 46 (0.25) | ||||
| G33538G | 29 (0.27) | 19 (0.26) | 57 (0.30) | ||||
| Allele T | 114 (0.54) | 91 (0.62) | 2.59 | 0.11 | 0.70 (0.46–1.08) | 216 (0.57) | 0.39 |
| Allele G | 98 (0.46) | 55 (0.38) | 160 (0.43) | ||||
| rs2134095 | ( | ( | ( | ||||
| T37041T | 59 (0.56) | 46 (0.62) | 0.83 | 0.66 | 114 (0.60) | 0.58 | |
| T37041C | 41 (0.39) | 25 (0.34) | 62 (0.33) | ||||
| C37041C | 6 (0.06) | 3 (0.04) | 13 (0.07) | ||||
| Allele T | 159 (0.75) | 117 (0.79) | 0.80 | 0.37 | 0.79 (0.48–1.31) | 290 (0.77) | 0.64 |
| Allele C | 53 (0.25) | 31 (0.21) | 88 (0.23) | ||||
| rs283696 | ( | ( | ( | ||||
| G38550G | 72 (0.62) | 35 (0.48) | 5.08 | 0.08 | 88 (0.48) |
| |
| G38550A | 38 (0.33) | 29 (0.40) | 68 (0.37) | ||||
| A38550A | 6 (0.05) | 9 (0.12) | 27 (0.15) | ||||
| Allele G | 182 (0.78) | 99 (0.68) | 5.32 |
| 1.73 (1.08–2.76) | 244 (0.67) |
|
| Allele A | 50 (0.22) | 47 (0.32) | 122 (0.33) | ||||
| rs10918169 | ( | ( | ( | ||||
| G44118G | 9 (0.08) | 9 (0.12) | 2.77 | 0.25 | 21 (0.12) | 0.13 | |
| G44118C | 38 (0.32) | 28 (0.39) | 65 (0.39) | ||||
| C44118C | 71 (0.60) | 35 (0.49) | 82 (0.49) | ||||
| Allele G | 56 (0.24) | 46 (0.32) | 3.07 | 0.08 | 0.66 (0.42–1.05) | 107 (0.32) |
|
| Allele C | 180 (0.76) | 98 (0.68) | 229 (0.68) |
*All significant (P< 0.05–0.02) before correction for multiple comparisons (P ).
RXR-gamma: retinoid X receptor-gamma; OR: odds ratio; SNPs: single nucleotide polymorphisms; FCHL: familial combined hyperlipidemia.
The positions are related to NCBI Reference Sequence NC_000001.10 (Homo sapiens chromosome 1, GRCh37.p2 primary reference assembly).
Haplotype frequencies in all FCHL affected and controls for the five analysed SNPs.
| ID | Haplotypes | Case ( | Control ( |
| Odds ratio [95% CI] |
|---|---|---|---|---|---|
| 1 | CGCGC | 0.130 (41) | 0.134 (21) | 0.862126 | 1.052 [0.594~1.861] |
| 2 | CGTAG | 0.070 (22) | 0.077 (12) | 0.913662 | 0.960 [0.463~1.994] |
| 3 | CGTGC | 0.032 (10) | 0.058 (9) | 0.215309 | 0.558 [0.219~1.420] |
| 4 | CTCGC | 0.077 (24) | 0.09 (14) | 0.780397 | 0.907 [0.456~1.804] |
| 5 | CTTAC | 0.038 (12) | 0.013 (2) | 0.119377 | 3.081 [0.696~13.636] |
| 6 | CTTAG | 0.189 (59) | 0.115 (18) |
|
|
| 7 | CTTGC | 0.051 (16) | 0.096 (15) | 0.101978 | 0.547 [0.263~1.137] |
| 8 | TGTGC | 0.054 (17) | 0.135 (21) |
|
|
| 9 | TTTGC | 0.234 (73) | 0.220 (34) | 0.457251 | 1.194 [0.748~1.905] |
CI: confidence interval; SNPs: single nucleotide polymorphisms; FCHL: familial combined hyperlipidemia.
All frequencies <0.03 have been ignored in analysis. Loci chosen for hap-analysis: rs1128977, rs2651860, rs2134095, rs283696, and rs10918169.
The number of chromosomes valid for analysis is reported in parentheses (312 out of 384 chromosomes for the 192 FCHL affected and 156 out of 238 chromosomes for the 119 controls). Global χ 2 is 18.905838 while df = 8. Fisher's P value is 0.015506; Pearson's P value is 0.015371.