Literature DB >> 27939598

Alternative roles for oxidized mCs and TETs.

Luisa Cimmino1, Iannis Aifantis2.   

Abstract

Ten-eleven-translocation (TET) proteins oxidize 5-methylcytosine (5mC) to form stable or transient modifications (oxi-mCs) in the mammalian genome. Genome-wide mapping and protein interaction studies have shown that 5mC and oxi-mCs have unique distribution patterns and alternative roles in gene expression. In addition, oxi-mCs may interact with specific chromatin regulators, transcription factors and DNA repair proteins to maintain genomic integrity or alter DNA replication and transcriptional elongation rates. In this review we will discuss recent advances in our understanding of how TETs and 5hmC exert their epigenetic function as tumor suppressors by playing alternative roles in transcriptional regulation and genomic stability. Published by Elsevier Ltd.

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Year:  2016        PMID: 27939598      PMCID: PMC5446793          DOI: 10.1016/j.gde.2016.11.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  86 in total

1.  TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing.

Authors:  Ryan J Marina; David Sturgill; Marc A Bailly; Morgan Thenoz; Garima Varma; Maria F Prigge; Kyster K Nanan; Sanjeev Shukla; Nazmul Haque; Shalini Oberdoerffer
Journal:  EMBO J       Date:  2015-12-28       Impact factor: 11.598

2.  Genomic analysis of metastatic cutaneous squamous cell carcinoma.

Authors:  Yvonne Y Li; Glenn J Hanna; Alvaro C Laga; Robert I Haddad; Jochen H Lorch; Peter S Hammerman
Journal:  Clin Cancer Res       Date:  2015-01-14       Impact factor: 12.531

3.  Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites.

Authors:  Atanu Maiti; Alexander C Drohat
Journal:  J Biol Chem       Date:  2011-08-23       Impact factor: 5.157

4.  WT1 recruits TET2 to regulate its target gene expression and suppress leukemia cell proliferation.

Authors:  Yiping Wang; Mengtao Xiao; Xiufei Chen; Leilei Chen; Yanping Xu; Lei Lv; Pu Wang; Hui Yang; Shenghong Ma; Huaipeng Lin; Bo Jiao; Ruibao Ren; Dan Ye; Kun-Liang Guan; Yue Xiong
Journal:  Mol Cell       Date:  2015-01-15       Impact factor: 17.970

5.  Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA.

Authors:  Toni Pfaffeneder; Fabio Spada; Mirko Wagner; Caterina Brandmayr; Silvia K Laube; David Eisen; Matthias Truss; Jessica Steinbacher; Benjamin Hackner; Olga Kotljarova; David Schuermann; Stylianos Michalakis; Olesea Kosmatchev; Stefan Schiesser; Barbara Steigenberger; Nada Raddaoui; Gengo Kashiwazaki; Udo Müller; Cornelia G Spruijt; Michiel Vermeulen; Heinrich Leonhardt; Primo Schär; Markus Müller; Thomas Carell
Journal:  Nat Chem Biol       Date:  2014-05-18       Impact factor: 15.040

6.  Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.

Authors:  Shinsuke Ito; Ana C D'Alessio; Olena V Taranova; Kwonho Hong; Lawrence C Sowers; Yi Zhang
Journal:  Nature       Date:  2010-08-26       Impact factor: 49.962

7.  Tissue-specific mutation accumulation in human adult stem cells during life.

Authors:  Francis Blokzijl; Joep de Ligt; Myrthe Jager; Valentina Sasselli; Sophie Roerink; Nobuo Sasaki; Meritxell Huch; Sander Boymans; Ewart Kuijk; Pjotr Prins; Isaac J Nijman; Inigo Martincorena; Michal Mokry; Caroline L Wiegerinck; Sabine Middendorp; Toshiro Sato; Gerald Schwank; Edward E S Nieuwenhuis; Monique M A Verstegen; Luc J W van der Laan; Jeroen de Jonge; Jan N M IJzermans; Robert G Vries; Marc van de Wetering; Michael R Stratton; Hans Clevers; Edwin Cuppen; Ruben van Boxtel
Journal:  Nature       Date:  2016-10-03       Impact factor: 49.962

Review 8.  Molecular landscape of acute myeloid leukemia in younger adults and its clinical relevance.

Authors:  David Grimwade; Adam Ivey; Brian J P Huntly
Journal:  Blood       Date:  2015-12-10       Impact factor: 25.476

9.  Tet1 and Tet2 Protect DNA Methylation Canyons against Hypermethylation.

Authors:  Laura Wiehle; Günter Raddatz; Tanja Musch; Meelad M Dawlaty; Rudolf Jaenisch; Frank Lyko; Achim Breiling
Journal:  Mol Cell Biol       Date:  2015-11-23       Impact factor: 5.069

10.  Signatures of mutational processes in human cancer.

Authors:  Ludmil B Alexandrov; Serena Nik-Zainal; David C Wedge; Samuel A J R Aparicio; Sam Behjati; Andrew V Biankin; Graham R Bignell; Niccolò Bolli; Ake Borg; Anne-Lise Børresen-Dale; Sandrine Boyault; Birgit Burkhardt; Adam P Butler; Carlos Caldas; Helen R Davies; Christine Desmedt; Roland Eils; Jórunn Erla Eyfjörd; John A Foekens; Mel Greaves; Fumie Hosoda; Barbara Hutter; Tomislav Ilicic; Sandrine Imbeaud; Marcin Imielinski; Marcin Imielinsk; Natalie Jäger; David T W Jones; David Jones; Stian Knappskog; Marcel Kool; Sunil R Lakhani; Carlos López-Otín; Sancha Martin; Nikhil C Munshi; Hiromi Nakamura; Paul A Northcott; Marina Pajic; Elli Papaemmanuil; Angelo Paradiso; John V Pearson; Xose S Puente; Keiran Raine; Manasa Ramakrishna; Andrea L Richardson; Julia Richter; Philip Rosenstiel; Matthias Schlesner; Ton N Schumacher; Paul N Span; Jon W Teague; Yasushi Totoki; Andrew N J Tutt; Rafael Valdés-Mas; Marit M van Buuren; Laura van 't Veer; Anne Vincent-Salomon; Nicola Waddell; Lucy R Yates; Jessica Zucman-Rossi; P Andrew Futreal; Ultan McDermott; Peter Lichter; Matthew Meyerson; Sean M Grimmond; Reiner Siebert; Elías Campo; Tatsuhiro Shibata; Stefan M Pfister; Peter J Campbell; Michael R Stratton
Journal:  Nature       Date:  2013-08-14       Impact factor: 49.962

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  13 in total

1.  Harnessing Hematopoietic Stem Cell Low Intracellular Calcium Improves Their Maintenance In Vitro.

Authors:  Larry L Luchsinger; Alexandros Strikoudis; Nichole M Danzl; Erin C Bush; Michael O Finlayson; Prakash Satwani; Megan Sykes; Masayuki Yazawa; Hans-Willem Snoeck
Journal:  Cell Stem Cell       Date:  2019-06-06       Impact factor: 24.633

2.  Deoxyuridine in DNA has an inhibitory and promutagenic effect on RNA transcription by diverse RNA polymerases.

Authors:  Junru Cui; Anthony Gizzi; James T Stivers
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

Review 3.  Advances into understanding metabolites as signaling molecules in cancer progression.

Authors:  Joyce Y Liu; Kathryn E Wellen
Journal:  Curr Opin Cell Biol       Date:  2020-02-22       Impact factor: 8.382

Review 4.  Calcium regulation of stem cells.

Authors:  Hans-Willem Snoeck
Journal:  EMBO Rep       Date:  2020-05-17       Impact factor: 8.807

Review 5.  Deciphering the multifaceted roles of TET proteins in T-cell lineage specification and malignant transformation.

Authors:  Ageliki Tsagaratou
Journal:  Immunol Rev       Date:  2021-01-07       Impact factor: 12.988

6.  α-Ketoglutarate links p53 to cell fate during tumour suppression.

Authors:  John P Morris; Jossie J Yashinskie; Richard Koche; Rohit Chandwani; Sha Tian; Chi-Chao Chen; Timour Baslan; Zoran S Marinkovic; Francisco J Sánchez-Rivera; Steven D Leach; Carlos Carmona-Fontaine; Craig B Thompson; Lydia W S Finley; Scott W Lowe
Journal:  Nature       Date:  2019-09-18       Impact factor: 69.504

Review 7.  Emerging mechanisms underlying astrogenesis in the developing mammalian brain.

Authors:  Jun Takouda; Sayako Katada; Kinichi Nakashima
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2017       Impact factor: 3.493

8.  Insights into Epigenome Evolution from Animal and Plant Methylomes.

Authors:  Soojin V Yi
Journal:  Genome Biol Evol       Date:  2017-11-01       Impact factor: 3.416

9.  Catalytic Space Engineering as a Strategy to Activate C-H Oxidation on 5-Methylcytosine in Mammalian Genome.

Authors:  Sushma Sappa; Debasis Dey; Babu Sudhamalla; Kabirul Islam
Journal:  J Am Chem Soc       Date:  2021-07-29       Impact factor: 16.383

Review 10.  A Lexicon of DNA Modifications: Their Roles in Embryo Development and the Germline.

Authors:  Qifan Zhu; Reinhard Stöger; Ramiro Alberio
Journal:  Front Cell Dev Biol       Date:  2018-03-27
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