Literature DB >> 27935712

The Monomer Electron Density Force Field (MEDFF): A Physically Inspired Model for Noncovalent Interactions.

Steven Vandenbrande1, Michel Waroquier1, Veronique Van Speybroeck1, Toon Verstraelen1.   

Abstract

We propose a methodology to derive pairwise-additive noncovalent force fields from monomer electron densities without any empirical input. Energy expressions are based on the symmetry-adapted perturbation theory (SAPT) decomposition of interaction energies. This ensures a physically motivated force field featuring an electrostatic, exchange-repulsion, dispersion, and induction contribution, which contains two types of parameters. First, each contribution depends on several fixed atomic parameters, resulting from a partitioning of the monomer electron density. Second, each of the last three contributions (exchange-repulsion, dispersion, and induction) contains exactly one linear fitting parameter. These three so-called interaction parameters in the model are initially estimated separately using SAPT reference calculations for the S66x8 database of noncovalent dimers. In a second step, the three interaction parameters are further refined simultaneously to reproduce CCSD(T)/CBS interaction energies for the same database. The limited number of parameters that are fitted to dimer interaction energies (only three) avoids ill-conditioned fits that plague conventional parameter optimizations. For the exchange-repulsion and dispersion component, good results are obtained for all dimers in the S66x8 database using one single value for the associated interaction parameters. The values of those parameters can be considered universal and can also be used for dimers not present in the original database used for fitting. For the induction component such an approach is only viable for the dispersion-dominated dimers in the S66x8 database. For other dimers (such as hydrogen-bonded complexes), we show that our methodology remains applicable. However, the interaction parameter needs to be determined on a case-specific basis. As an external validation, the force field predicts interaction energies in good agreement with CCSD(T)/CBS values for dispersion-dominated dimers extracted from an HIV-II protease crystal structure with a bound ligand (indinavir). Furthermore, experimental second virial coefficients of small alkanes and alkenes are well reproduced.

Entities:  

Year:  2016        PMID: 27935712     DOI: 10.1021/acs.jctc.6b00969

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

1.  AMOEBA+ Classical Potential for Modeling Molecular Interactions.

Authors:  Chengwen Liu; Jean-Philip Piquemal; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2019-06-11       Impact factor: 6.006

2.  On the faithfulness of molecular mechanics representations of proteins towards quantum-mechanical energy surfaces.

Authors:  Gerhard König; Sereina Riniker
Journal:  Interface Focus       Date:  2020-10-16       Impact factor: 3.906

3.  Data-Driven Mapping of Gas-Phase Quantum Calculations to General Force Field Lennard-Jones Parameters.

Authors:  Sophie M Kantonen; Hari S Muddana; Michael Schauperl; Niel M Henriksen; Lee-Ping Wang; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2020-01-17       Impact factor: 6.006

4.  Hydration Free Energies in the FreeSolv Database Calculated with Polarized Iterative Hirshfeld Charges.

Authors:  Maximiliano Riquelme; Alejandro Lara; David L Mobley; Toon Verstraelen; Adelio R Matamala; Esteban Vöhringer-Martinez
Journal:  J Chem Inf Model       Date:  2018-08-31       Impact factor: 4.956

5.  A collection of forcefield precursors for metal-organic frameworks.

Authors:  Taoyi Chen; Thomas A Manz
Journal:  RSC Adv       Date:  2019-11-13       Impact factor: 4.036

6.  Methane Adsorption in Zr-Based MOFs: Comparison and Critical Evaluation of Force Fields.

Authors:  Steven Vandenbrande; Toon Verstraelen; Juan José Gutiérrez-Sevillano; Michel Waroquier; Veronique Van Speybroeck
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2017-10-24       Impact factor: 4.126

7.  Extension of the QuickFF force field protocol for an improved accuracy of structural, vibrational, mechanical and thermal properties of metal-organic frameworks.

Authors:  Louis Vanduyfhuys; Steven Vandenbrande; Jelle Wieme; Michel Waroquier; Toon Verstraelen; Veronique Van Speybroeck
Journal:  J Comput Chem       Date:  2018-02-02       Impact factor: 3.376

8.  Ab Initio Evaluation of Henry Coefficients Using Importance Sampling.

Authors:  Steven Vandenbrande; Michel Waroquier; Veronique Van Speybroeck; Toon Verstraelen
Journal:  J Chem Theory Comput       Date:  2018-11-09       Impact factor: 6.006

9.  Steric "attraction": not by dispersion alone.

Authors:  Ganna Gryn'ova; Clémence Corminboeuf
Journal:  Beilstein J Org Chem       Date:  2018-06-19       Impact factor: 2.883

10.  A Quantum Chemical Topology Picture of Intermolecular Electrostatic Interactions and Charge Penetration Energy.

Authors:  Fernando Jiménez-Grávalos; Dimas Suárez
Journal:  J Chem Theory Comput       Date:  2021-07-19       Impact factor: 6.006

  10 in total

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