Literature DB >> 27930319

CO synthesized from the central one-carbon pool as source for the iron carbonyl in O2-tolerant [NiFe]-hydrogenase.

Ingmar Bürstel1,2, Elisabeth Siebert2, Stefan Frielingsdorf1,2, Ingo Zebger2, Bärbel Friedrich1, Oliver Lenz3,2.   

Abstract

Hydrogenases are nature's key catalysts involved in both microbial consumption and production of molecular hydrogen. H2 exhibits a strongly bonded, almost inert electron pair and requires transition metals for activation. Consequently, all hydrogenases are metalloenzymes that contain at least one iron atom in the catalytic center. For appropriate interaction with H2, the iron moiety demands for a sophisticated coordination environment that cannot be provided just by standard amino acids. This dilemma has been overcome by the introduction of unprecedented chemistry-that is, by ligating the iron with carbon monoxide (CO) and cyanide (or equivalent) groups. These ligands are both unprecedented in microbial metabolism and, in their free form, highly toxic to living organisms. Therefore, the formation of the diatomic ligands relies on dedicated biosynthesis pathways. So far, biosynthesis of the CO ligand in [NiFe]-hydrogenases was unknown. Here we show that the aerobic H2 oxidizer Ralstonia eutropha, which produces active [NiFe]-hydrogenases in the presence of O2, employs the auxiliary protein HypX (hydrogenase pleiotropic maturation X) for CO ligand formation. Using genetic engineering and isotope labeling experiments in combination with infrared spectroscopic investigations, we demonstrate that the α-carbon of glycine ends up in the CO ligand of [NiFe]-hydrogenase. The α-carbon of glycine is a building block of the central one-carbon metabolism intermediate, N10-formyl-tetrahydrofolate (N10-CHO-THF). Evidence is presented that the multidomain protein, HypX, converts the formyl group of N10-CHO-THF into water and CO, thereby providing the carbonyl ligand for hydrogenase. This study contributes insights into microbial biosynthesis of metal carbonyls involving toxic intermediates.

Entities:  

Keywords:  carbonyl ligand; formyl-THF; hydrogenase; metalloenzyme; one-carbon metabolism

Mesh:

Substances:

Year:  2016        PMID: 27930319      PMCID: PMC5187695          DOI: 10.1073/pnas.1614656113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

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2.  The Alcaligenes eutrophus H16 hoxX gene participates in hydrogenase regulation.

Authors:  O Lenz; E Schwartz; J Dernedde; M Eitinger; B Friedrich
Journal:  J Bacteriol       Date:  1994-07       Impact factor: 3.490

3.  Probing the origin of the metabolic precursor of the CO ligand in the catalytic center of [NiFe] hydrogenase.

Authors:  Ingmar Bürstel; Philipp Hummel; Elisabeth Siebert; Nattawadee Wisitruangsakul; Ingo Zebger; Bärbel Friedrich; Oliver Lenz
Journal:  J Biol Chem       Date:  2011-11-01       Impact factor: 5.157

4.  The H(2) sensor of Ralstonia eutropha is a member of the subclass of regulatory [NiFe] hydrogenases.

Authors:  L Kleihues; O Lenz; M Bernhard; T Buhrke; B Friedrich
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

5.  Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase.

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Journal:  J Biol Inorg Chem       Date:  2010-03-10       Impact factor: 3.358

6.  Glycine metabolism by rat liver mitochondria. 3. The glycine cleavage and the exchange of carboxyl carbon of glycine with bicarbonate.

Authors:  T Sato; H Kochi; N Sato; G Kikuchi
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Authors:  R B Hamed; E T Batchelar; I J Clifton; C J Schofield
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Review 8.  FDH: an aldehyde dehydrogenase fusion enzyme in folate metabolism.

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Journal:  Chem Biol Interact       Date:  2008-09-19       Impact factor: 5.192

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Review 10.  Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia.

Authors:  Goro Kikuchi; Yutaro Motokawa; Tadashi Yoshida; Koichi Hiraga
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2008       Impact factor: 3.493

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  11 in total

1.  Proteolytic cleavage orchestrates cofactor insertion and protein assembly in [NiFe]-hydrogenase biosynthesis.

Authors:  Moritz Senger; Sven T Stripp; Basem Soboh
Journal:  J Biol Chem       Date:  2017-05-24       Impact factor: 5.157

2.  A whole-cell, high-throughput hydrogenase assay to identify factors that modulate [NiFe]-hydrogenase activity.

Authors:  Michael J Lacasse; Stephanie Sebastiampillai; Jean-Philippe Côté; Nicholas Hodkinson; Eric D Brown; Deborah B Zamble
Journal:  J Biol Chem       Date:  2019-08-27       Impact factor: 5.157

3.  Enzymatic and spectroscopic properties of a thermostable [NiFe]‑hydrogenase performing H2-driven NAD+-reduction in the presence of O2.

Authors:  Janina Preissler; Stefan Wahlefeld; Christian Lorent; Christian Teutloff; Marius Horch; Lars Lauterbach; Stephen P Cramer; Ingo Zebger; Oliver Lenz
Journal:  Biochim Biophys Acta Bioenerg       Date:  2017-09-29       Impact factor: 3.991

4.  Bioassembly of complex iron-sulfur enzymes: hydrogenases and nitrogenases.

Authors:  R David Britt; Guodong Rao; Lizhi Tao
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5.  The Biotic and Abiotic Carbon Monoxide Formation During Aerobic Co-digestion of Dairy Cattle Manure With Green Waste and Sawdust.

Authors:  Sylwia Stegenta-Dąbrowska; Grzegorz Drabczyński; Karolina Sobieraj; Jacek A Koziel; Andrzej Białowiec
Journal:  Front Bioeng Biotechnol       Date:  2019-10-29

6.  Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase.

Authors:  Norifumi Muraki; Kentaro Ishii; Susumu Uchiyama; Satoru G Itoh; Hisashi Okumura; Shigetoshi Aono
Journal:  Commun Biol       Date:  2019-10-18

7.  Electron inventory of the iron-sulfur scaffold complex HypCD essential in [NiFe]-hydrogenase cofactor assembly.

Authors:  Sven T Stripp; Jonathan Oltmanns; Christina S Müller; David Ehrenberg; Ramona Schlesinger; Joachim Heberle; Lorenz Adrian; Volker Schünemann; Antonio J Pierik; Basem Soboh
Journal:  Biochem J       Date:  2021-09-17       Impact factor: 3.857

8.  Studies on the aerobic utilization of synthesis gas (syngas) by wild type and recombinant strains of Ralstonia eutropha H16.

Authors:  Daniel Heinrich; Matthias Raberg; Alexander Steinbüchel
Journal:  Microb Biotechnol       Date:  2017-10-13       Impact factor: 5.813

Review 9.  Using gas mixtures of CO, CO2 and H2 as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.

Authors:  Ralf Takors; Michael Kopf; Joerg Mampel; Wilfried Bluemke; Bastian Blombach; Bernhard Eikmanns; Frank R Bengelsdorf; Dirk Weuster-Botz; Peter Dürre
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10.  A membrane-bound [NiFe]-hydrogenase large subunit precursor whose C-terminal extension is not essential for cofactor incorporation but guarantees optimal maturation.

Authors:  Sven Hartmann; Stefan Frielingsdorf; Giorgio Caserta; Oliver Lenz
Journal:  Microbiologyopen       Date:  2020-03-16       Impact factor: 3.139

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