Literature DB >> 22049085

Probing the origin of the metabolic precursor of the CO ligand in the catalytic center of [NiFe] hydrogenase.

Ingmar Bürstel1, Philipp Hummel, Elisabeth Siebert, Nattawadee Wisitruangsakul, Ingo Zebger, Bärbel Friedrich, Oliver Lenz.   

Abstract

The O(2)-tolerant [NiFe] hydrogenases of Ralstonia eutropha are capable of H(2) conversion in the presence of ambient O(2). Oxygen represents not only a challenge for catalysis but also for the complex assembling process of the [NiFe] active site. Apart from nickel and iron, the catalytic center contains unusual diatomic ligands, namely two cyanides (CN(-)) and one carbon monoxide (CO), which are coordinated to the iron. One of the open questions of the maturation process concerns the origin and biosynthesis of the CO group. Isotope labeling in combination with infrared spectroscopy revealed that externally supplied gaseous (13)CO serves as precursor of the carbonyl group of the regulatory [NiFe] hydrogenase in R. eutropha. Corresponding (13)CO titration experiments showed that a concentration 130-fold higher than ambient CO (0.1 ppmv) caused a 50% labeling of the carbonyl ligand in the [NiFe] hydrogenase, leading to the conclusion that the carbonyl ligand originates from an intracellular metabolite. A novel setup allowed us to the study effects of CO depletion on maturation in vivo. Upon induction of CO depletion by addition of the CO scavenger PdCl(2), cells cultivated on H(2), CO(2), and O(2) showed severe growth retardation at low cell concentrations, which was on the basis of partially arrested hydrogenase maturation, leading to reduced hydrogenase activity. This suggests gaseous CO as a metabolic precursor under these conditions. The addition of PdCl(2) to cells cultivated heterotrophically on organic substrates had no effect on hydrogenase maturation. These results indicate at least two different pathways for biosynthesis of the CO ligand of [NiFe] hydrogenase.

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Year:  2011        PMID: 22049085      PMCID: PMC3247962          DOI: 10.1074/jbc.M111.309351

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

1.  The H2 sensor of Ralstonia eutropha. Biochemical characteristics, spectroscopic properties, and its interaction with a histidine protein kinase.

Authors:  M Bernhard; T Buhrke; B Bleijlevens; A L De Lacey; V M Fernandez; S P Albracht; B Friedrich
Journal:  J Biol Chem       Date:  2001-02-16       Impact factor: 5.157

Review 2.  Insights into [FeFe]-hydrogenase structure, mechanism, and maturation.

Authors:  David W Mulder; Eric M Shepard; Jonathan E Meuser; Neelambari Joshi; Paul W King; Matthew C Posewitz; Joan B Broderick; John W Peters
Journal:  Structure       Date:  2011-08-10       Impact factor: 5.006

Review 3.  Hydrogenases from methanogenic archaea, nickel, a novel cofactor, and H2 storage.

Authors:  Rudolf K Thauer; Anne-Kristin Kaster; Meike Goenrich; Michael Schick; Takeshi Hiromoto; Seigo Shima
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

4.  [FeFe]-hydrogenase maturation: HydG-catalyzed synthesis of carbon monoxide.

Authors:  Eric M Shepard; Benjamin R Duffus; Simon J George; Shawn E McGlynn; Martin R Challand; Kevin D Swanson; Peter L Roach; Stephen P Cramer; John W Peters; Joan B Broderick
Journal:  J Am Chem Soc       Date:  2010-07-14       Impact factor: 15.419

5.  Taming of a poison: biosynthesis of the NiFe-hydrogenase cyanide ligands.

Authors:  Stefanie Reissmann; Elisabeth Hochleitner; Haofan Wang; Athanasios Paschos; Friedrich Lottspeich; Richard S Glass; August Böck
Journal:  Science       Date:  2003-02-14       Impact factor: 47.728

6.  The H(2) sensor of Ralstonia eutropha: biochemical and spectroscopic analysis of mutant proteins modified at a conserved glutamine residue close to the [NiFe] active site.

Authors:  Thorsten Buhrke; Marc Brecht; Wolfgang Lubitz; Bärbel Friedrich
Journal:  J Biol Inorg Chem       Date:  2002-06-18       Impact factor: 3.358

7.  Analysis of the transcarbamoylation-dehydration reaction catalyzed by the hydrogenase maturation proteins HypF and HypE.

Authors:  Melanie Blokesch; Athanasios Paschos; Anette Bauer; Stefanie Reissmann; Nikola Drapal; August Böck
Journal:  Eur J Biochem       Date:  2004-08

8.  Maturation of [NiFe]-hydrogenases in Escherichia coli: the HypC cycle.

Authors:  Melanie Blokesch; August Böck
Journal:  J Mol Biol       Date:  2002-11-22       Impact factor: 5.469

9.  HybF, a zinc-containing protein involved in NiFe hydrogenase maturation.

Authors:  Melanie Blokesch; Michaela Rohrmoser; Sabine Rode; August Böck
Journal:  J Bacteriol       Date:  2004-05       Impact factor: 3.490

10.  Network of hydrogenase maturation in Escherichia coli: role of accessory proteins HypA and HybF.

Authors:  Michaela Hube; Melanie Blokesch; August Böck
Journal:  J Bacteriol       Date:  2002-07       Impact factor: 3.490

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  11 in total

1.  Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases.

Authors:  Yasuhito Shomura; Yoshiki Higuchi
Journal:  J Biol Chem       Date:  2012-06-27       Impact factor: 5.157

2.  Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1.

Authors:  Taiga Tominaga; Satoshi Watanabe; Rie Matsumi; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-09-22

3.  A universal scaffold for synthesis of the Fe(CN)2(CO) moiety of [NiFe] hydrogenase.

Authors:  Ingmar Bürstel; Elisabeth Siebert; Gordon Winter; Philipp Hummel; Ingo Zebger; Bärbel Friedrich; Oliver Lenz
Journal:  J Biol Chem       Date:  2012-09-27       Impact factor: 5.157

4.  CO synthesized from the central one-carbon pool as source for the iron carbonyl in O2-tolerant [NiFe]-hydrogenase.

Authors:  Ingmar Bürstel; Elisabeth Siebert; Stefan Frielingsdorf; Ingo Zebger; Bärbel Friedrich; Oliver Lenz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-05       Impact factor: 11.205

Review 5.  Structure, function and biosynthesis of O₂-tolerant hydrogenases.

Authors:  Johannes Fritsch; Oliver Lenz; Bärbel Friedrich
Journal:  Nat Rev Microbiol       Date:  2013-02       Impact factor: 60.633

6.  Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation.

Authors:  Taiga Tominaga; Satoshi Watanabe; Rie Matsumi; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

7.  Nuclear resonance vibrational spectroscopy reveals the FeS cluster composition and active site vibrational properties of an O2-tolerant NAD+-reducing [NiFe] hydrogenase.

Authors:  Lars Lauterbach; Hongxin Wang; Marius Horch; Leland B Gee; Yoshitaka Yoda; Yoshihito Tanaka; Ingo Zebger; Oliver Lenz; Stephen P Cramer
Journal:  Chem Sci       Date:  2015       Impact factor: 9.825

8.  Dual role of HupF in the biosynthesis of [NiFe] hydrogenase in Rhizobium leguminosarum.

Authors:  Marta Albareda; Hamid Manyani; Juan Imperial; Belén Brito; Tomás Ruiz-Argüeso; August Böck; Jose-Manuel Palacios
Journal:  BMC Microbiol       Date:  2012-11-08       Impact factor: 3.605

9.  Comparative genomic analyses of the cyanobacterium, Lyngbya aestuarii BL J, a powerful hydrogen producer.

Authors:  Ankita Kothari; Michael Vaughn; Ferran Garcia-Pichel
Journal:  Front Microbiol       Date:  2013-12-11       Impact factor: 5.640

10.  A membrane-bound [NiFe]-hydrogenase large subunit precursor whose C-terminal extension is not essential for cofactor incorporation but guarantees optimal maturation.

Authors:  Sven Hartmann; Stefan Frielingsdorf; Giorgio Caserta; Oliver Lenz
Journal:  Microbiologyopen       Date:  2020-03-16       Impact factor: 3.139

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