| Literature DB >> 27920916 |
Jorge Jimenez1, Indranil Chakraborty1, Pradip Mascharak1.
Abstract
The title compound, [ReCl(pyAm)(CO)3], where pyAm is 1-[(pyridin-2-yl-methyl-idene)amino]-adamantane (C16H20N2), was synthesized from the reaction of [ReCl(CO)5] and pyAm in an equimolar ratio. The ReI atom resides in an octa-hedral C3ClN2 coordination sphere. The Re-C bond trans to the chloride ligand is noticeably longer compared to the other two Re-C distances. Weak C-H⋯Cl hydrogen-bonding inter-actions consoldiate the packing of the mol-ecules. In this design, the pyAm ligand was employed due to its well-known pharmacokinetic properties.Entities:
Keywords: adamantane motif; crystal structure; fac-Re(CO)3; lipophilicity; rhenium complex
Year: 2016 PMID: 27920916 PMCID: PMC5120706 DOI: 10.1107/S205698901601255X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title complex. Displacement ellipsoids correspond to 50% probability levels.
Selected geometric parameters (Å, °)
| Re1—C2 | 1.918 (4) | Re1—N1 | 2.175 (3) |
| Re1—C3 | 1.920 (3) | Re1—N2 | 2.213 (2) |
| Re1—C1 | 1.963 (4) | Re1—Cl1 | 2.4700 (8) |
| C2—Re1—C3 | 86.46 (14) | C1—Re1—N2 | 92.65 (11) |
| C2—Re1—C1 | 88.36 (14) | N1—Re1—N2 | 75.41 (9) |
| C3—Re1—C1 | 92.35 (14) | C2—Re1—Cl1 | 96.08 (9) |
| C2—Re1—N1 | 176.25 (11) | C3—Re1—Cl1 | 90.98 (11) |
| C3—Re1—N1 | 97.12 (13) | C1—Re1—Cl1 | 174.61 (10) |
| C1—Re1—N1 | 92.59 (12) | N1—Re1—Cl1 | 82.78 (7) |
| C2—Re1—N2 | 100.93 (11) | N2—Re1—Cl1 | 83.53 (6) |
| C3—Re1—N2 | 171.19 (12) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C9—H9⋯Cl1i | 0.93 | 2.76 | 3.523 (3) | 140 |
| C7—H7⋯Cl1i | 0.93 | 2.92 | 3.662 (4) | 137 |
| C18—H18 | 0.97 | 2.74 | 3.701 (3) | 170 |
Symmetry codes: (i) ; (ii) .
Figure 2Packing pattern of the title complex, showing the C—H⋯Cl interactions.
Figure 3Packing diagram of the title complex along the c axis.
Experimental details
| Crystal data | |
| Chemical formula | [ReCl(C16H20N2)(CO)3] |
|
| 546.02 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 273 |
|
| 6.9550 (6), 21.7483 (19), 12.4482 (11) |
| β (°) | 94.509 (1) |
|
| 1877.1 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 6.64 |
| Crystal size (mm) | 0.15 × 0.10 × 0.04 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.496, 0.745 |
| No. of measured, independent and observed [ | 20008, 4728, 4045 |
|
| 0.027 |
| (sin θ/λ)max (Å−1) | 0.683 |
| Refinement | |
|
| 0.023, 0.050, 1.05 |
| No. of reflections | 4728 |
| No. of parameters | 235 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.79, −0.55 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), XP in SHELXTL (Sheldrick, 2008 ▸), CrystalMaker (Palmer, 2014 ▸) and publCIF (Westrip, 2010 ▸).
| [ReCl(C16H20N2)(CO)3] | |
| Monoclinic, | Mo |
| Cell parameters from 8126 reflections | |
| θ = 2.5–24.1° | |
| µ = 6.64 mm−1 | |
| β = 94.509 (1)° | |
| Plate, yellow | |
| 0.15 × 0.10 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 4045 reflections with |
| ω scans | |
| Absorption correction: multi-scan ( | θmax = 29.1°, θmin = 2.5° |
| 20008 measured reflections | |
| 4728 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.002 | |
| 4728 reflections | Δρmax = 0.79 e Å−3 |
| 235 parameters | Δρmin = −0.55 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Re1 | 0.37969 (2) | 0.32771 (2) | 0.53456 (2) | 0.03239 (5) | |
| Cl1 | 0.23110 (12) | 0.42838 (4) | 0.48815 (7) | 0.0476 (2) | |
| N2 | 0.6343 (3) | 0.38424 (11) | 0.58745 (18) | 0.0298 (5) | |
| O2 | 0.1930 (4) | 0.30895 (12) | 0.7472 (2) | 0.0568 (7) | |
| N1 | 0.5242 (4) | 0.34377 (12) | 0.3884 (2) | 0.0371 (6) | |
| O3 | 0.0223 (4) | 0.26163 (13) | 0.4307 (3) | 0.0742 (9) | |
| O1 | 0.5930 (4) | 0.20826 (14) | 0.5848 (2) | 0.0729 (8) | |
| C17 | 0.7065 (4) | 0.35397 (14) | 0.7773 (2) | 0.0335 (6) | |
| H17A | 0.5911 | 0.3288 | 0.7708 | 0.040* | |
| H17B | 0.8147 | 0.3288 | 0.7598 | 0.040* | |
| C2 | 0.2629 (5) | 0.31762 (14) | 0.6679 (3) | 0.0399 (7) | |
| C8 | 0.6851 (4) | 0.37871 (15) | 0.4017 (2) | 0.0374 (7) | |
| C10 | 0.6832 (4) | 0.40873 (13) | 0.6989 (2) | 0.0296 (6) | |
| C1 | 0.5193 (5) | 0.25045 (17) | 0.5650 (3) | 0.0444 (8) | |
| C9 | 0.7374 (4) | 0.39986 (15) | 0.5113 (2) | 0.0374 (7) | |
| H9 | 0.8454 | 0.4246 | 0.5257 | 0.045* | |
| C7 | 0.7933 (5) | 0.39368 (18) | 0.3160 (3) | 0.0509 (9) | |
| H7 | 0.9039 | 0.4176 | 0.3269 | 0.061* | |
| C4 | 0.4683 (6) | 0.32441 (16) | 0.2888 (3) | 0.0501 (9) | |
| H4 | 0.3568 | 0.3008 | 0.2787 | 0.060* | |
| C3 | 0.1587 (5) | 0.28552 (16) | 0.4682 (3) | 0.0472 (8) | |
| C18 | 0.8699 (4) | 0.44667 (15) | 0.7101 (2) | 0.0384 (7) | |
| H18A | 0.8594 | 0.4813 | 0.6609 | 0.046* | |
| H18B | 0.9777 | 0.4215 | 0.6919 | 0.046* | |
| C14 | 0.9052 (5) | 0.47005 (15) | 0.8271 (3) | 0.0444 (8) | |
| H14 | 1.0239 | 0.4945 | 0.8337 | 0.053* | |
| C15 | 0.9266 (5) | 0.41588 (16) | 0.9048 (3) | 0.0460 (8) | |
| H15A | 0.9496 | 0.4307 | 0.9782 | 0.055* | |
| H15B | 1.0352 | 0.3906 | 0.8881 | 0.055* | |
| C5 | 0.5687 (6) | 0.33785 (17) | 0.2005 (3) | 0.0559 (10) | |
| H5 | 0.5250 | 0.3237 | 0.1325 | 0.067* | |
| C19 | 0.5695 (5) | 0.41766 (18) | 0.9200 (3) | 0.0511 (9) | |
| H19A | 0.4522 | 0.3934 | 0.9129 | 0.061* | |
| H19B | 0.5884 | 0.4321 | 0.9939 | 0.061* | |
| C16 | 0.7408 (5) | 0.37820 (15) | 0.8932 (2) | 0.0423 (7) | |
| H16 | 0.7528 | 0.3433 | 0.9430 | 0.051* | |
| C11 | 0.5154 (5) | 0.44984 (15) | 0.7271 (2) | 0.0392 (7) | |
| H11A | 0.5044 | 0.4848 | 0.6785 | 0.047* | |
| H11B | 0.3957 | 0.4268 | 0.7188 | 0.047* | |
| C6 | 0.7330 (6) | 0.37222 (18) | 0.2143 (3) | 0.0564 (10) | |
| H6 | 0.8038 | 0.3811 | 0.1558 | 0.068* | |
| C12 | 0.5508 (5) | 0.47239 (17) | 0.8435 (3) | 0.0505 (9) | |
| H12 | 0.4420 | 0.4980 | 0.8616 | 0.061* | |
| C13 | 0.7357 (6) | 0.51060 (17) | 0.8544 (3) | 0.0563 (10) | |
| H13A | 0.7576 | 0.5261 | 0.9274 | 0.068* | |
| H13B | 0.7239 | 0.5455 | 0.8057 | 0.068* |
| Re1 | 0.03066 (7) | 0.03249 (7) | 0.03334 (7) | −0.00218 (5) | −0.00171 (5) | −0.00180 (5) |
| Cl1 | 0.0399 (5) | 0.0493 (5) | 0.0525 (5) | 0.0033 (4) | −0.0035 (4) | 0.0066 (4) |
| N2 | 0.0258 (12) | 0.0349 (13) | 0.0281 (12) | 0.0010 (10) | −0.0019 (9) | −0.0014 (10) |
| O2 | 0.0540 (16) | 0.0645 (16) | 0.0542 (16) | −0.0045 (13) | 0.0188 (13) | 0.0064 (13) |
| N1 | 0.0388 (15) | 0.0427 (15) | 0.0293 (13) | 0.0026 (11) | −0.0009 (11) | −0.0061 (11) |
| O3 | 0.0520 (17) | 0.0655 (18) | 0.100 (2) | −0.0128 (14) | −0.0233 (16) | −0.0201 (16) |
| O1 | 0.067 (2) | 0.065 (2) | 0.085 (2) | 0.0119 (16) | −0.0044 (16) | −0.0020 (16) |
| C17 | 0.0331 (16) | 0.0357 (15) | 0.0311 (15) | 0.0000 (13) | −0.0009 (12) | 0.0012 (12) |
| C2 | 0.0325 (17) | 0.0354 (17) | 0.051 (2) | −0.0013 (13) | −0.0018 (15) | −0.0034 (14) |
| C8 | 0.0340 (17) | 0.0462 (18) | 0.0316 (15) | 0.0040 (13) | −0.0001 (12) | 0.0014 (13) |
| C10 | 0.0320 (15) | 0.0315 (15) | 0.0245 (14) | −0.0029 (12) | −0.0028 (11) | −0.0018 (11) |
| C1 | 0.048 (2) | 0.0429 (19) | 0.0407 (18) | −0.0109 (16) | −0.0049 (15) | −0.0019 (15) |
| C9 | 0.0267 (16) | 0.0519 (19) | 0.0333 (16) | −0.0056 (13) | 0.0000 (12) | 0.0000 (13) |
| C7 | 0.043 (2) | 0.074 (3) | 0.0352 (18) | −0.0016 (18) | 0.0046 (15) | 0.0082 (17) |
| C4 | 0.059 (2) | 0.053 (2) | 0.0364 (18) | −0.0015 (17) | −0.0052 (16) | −0.0083 (15) |
| C3 | 0.043 (2) | 0.0428 (19) | 0.054 (2) | −0.0011 (15) | −0.0085 (16) | −0.0058 (15) |
| C18 | 0.0365 (17) | 0.0397 (17) | 0.0381 (17) | −0.0081 (13) | −0.0027 (13) | 0.0039 (13) |
| C14 | 0.046 (2) | 0.0445 (19) | 0.0405 (18) | −0.0113 (15) | −0.0074 (15) | −0.0069 (14) |
| C15 | 0.047 (2) | 0.054 (2) | 0.0351 (17) | −0.0024 (16) | −0.0121 (15) | −0.0053 (15) |
| C5 | 0.076 (3) | 0.059 (2) | 0.0315 (18) | 0.008 (2) | −0.0020 (17) | −0.0086 (16) |
| C19 | 0.052 (2) | 0.073 (3) | 0.0290 (16) | −0.0026 (18) | 0.0039 (15) | −0.0115 (16) |
| C16 | 0.049 (2) | 0.0476 (19) | 0.0294 (16) | −0.0015 (15) | −0.0048 (14) | 0.0050 (13) |
| C11 | 0.0377 (18) | 0.0419 (18) | 0.0370 (17) | 0.0085 (14) | −0.0038 (13) | −0.0068 (13) |
| C6 | 0.064 (3) | 0.074 (3) | 0.0324 (18) | 0.010 (2) | 0.0105 (17) | 0.0049 (17) |
| C12 | 0.049 (2) | 0.057 (2) | 0.0452 (19) | 0.0102 (17) | −0.0002 (16) | −0.0187 (17) |
| C13 | 0.069 (3) | 0.047 (2) | 0.050 (2) | 0.0017 (18) | −0.0100 (18) | −0.0169 (17) |
| Re1—C2 | 1.918 (4) | C4—H4 | 0.9300 |
| Re1—C3 | 1.920 (3) | C18—C14 | 1.545 (4) |
| Re1—C1 | 1.963 (4) | C18—H18A | 0.9700 |
| Re1—N1 | 2.175 (3) | C18—H18B | 0.9700 |
| Re1—N2 | 2.213 (2) | C14—C15 | 1.524 (5) |
| Re1—Cl1 | 2.4700 (8) | C14—C13 | 1.532 (5) |
| N2—C9 | 1.279 (4) | C14—H14 | 0.9800 |
| N2—C10 | 1.500 (3) | C15—C16 | 1.527 (4) |
| O2—C2 | 1.149 (4) | C15—H15A | 0.9700 |
| N1—C4 | 1.338 (4) | C15—H15B | 0.9700 |
| N1—C8 | 1.352 (4) | C5—C6 | 1.365 (5) |
| O3—C3 | 1.149 (4) | C5—H5 | 0.9300 |
| O1—C1 | 1.070 (4) | C19—C12 | 1.524 (5) |
| C17—C16 | 1.537 (4) | C19—C16 | 1.526 (5) |
| C17—C10 | 1.541 (4) | C19—H19A | 0.9700 |
| C17—H17A | 0.9700 | C19—H19B | 0.9700 |
| C17—H17B | 0.9700 | C16—H16 | 0.9800 |
| C8—C7 | 1.392 (4) | C11—C12 | 1.532 (4) |
| C8—C9 | 1.458 (4) | C11—H11A | 0.9700 |
| C10—C11 | 1.533 (4) | C11—H11B | 0.9700 |
| C10—C18 | 1.535 (4) | C6—H6 | 0.9300 |
| C9—H9 | 0.9300 | C12—C13 | 1.528 (5) |
| C7—C6 | 1.383 (5) | C12—H12 | 0.9800 |
| C7—H7 | 0.9300 | C13—H13A | 0.9700 |
| C4—C5 | 1.379 (5) | C13—H13B | 0.9700 |
| C2—Re1—C3 | 86.46 (14) | C10—C18—H18B | 109.8 |
| C2—Re1—C1 | 88.36 (14) | C14—C18—H18B | 109.8 |
| C3—Re1—C1 | 92.35 (14) | H18A—C18—H18B | 108.2 |
| C2—Re1—N1 | 176.25 (11) | C15—C14—C13 | 110.1 (3) |
| C3—Re1—N1 | 97.12 (13) | C15—C14—C18 | 110.1 (3) |
| C1—Re1—N1 | 92.59 (12) | C13—C14—C18 | 109.3 (3) |
| C2—Re1—N2 | 100.93 (11) | C15—C14—H14 | 109.1 |
| C3—Re1—N2 | 171.19 (12) | C13—C14—H14 | 109.1 |
| C1—Re1—N2 | 92.65 (11) | C18—C14—H14 | 109.1 |
| N1—Re1—N2 | 75.41 (9) | C14—C15—C16 | 108.4 (3) |
| C2—Re1—Cl1 | 96.08 (9) | C14—C15—H15A | 110.0 |
| C3—Re1—Cl1 | 90.98 (11) | C16—C15—H15A | 110.0 |
| C1—Re1—Cl1 | 174.61 (10) | C14—C15—H15B | 110.0 |
| N1—Re1—Cl1 | 82.78 (7) | C16—C15—H15B | 110.0 |
| N2—Re1—Cl1 | 83.53 (6) | H15A—C15—H15B | 108.4 |
| C9—N2—C10 | 119.4 (2) | C6—C5—C4 | 119.2 (3) |
| C9—N2—Re1 | 114.15 (19) | C6—C5—H5 | 120.4 |
| C10—N2—Re1 | 126.21 (17) | C4—C5—H5 | 120.4 |
| C4—N1—C8 | 117.9 (3) | C12—C19—C16 | 109.4 (3) |
| C4—N1—Re1 | 127.2 (2) | C12—C19—H19A | 109.8 |
| C8—N1—Re1 | 114.88 (19) | C16—C19—H19A | 109.8 |
| C16—C17—C10 | 109.3 (2) | C12—C19—H19B | 109.8 |
| C16—C17—H17A | 109.8 | C16—C19—H19B | 109.8 |
| C10—C17—H17A | 109.8 | H19A—C19—H19B | 108.2 |
| C16—C17—H17B | 109.8 | C19—C16—C15 | 110.3 (3) |
| C10—C17—H17B | 109.8 | C19—C16—C17 | 109.4 (3) |
| H17A—C17—H17B | 108.3 | C15—C16—C17 | 109.9 (3) |
| O2—C2—Re1 | 177.1 (3) | C19—C16—H16 | 109.1 |
| N1—C8—C7 | 122.0 (3) | C15—C16—H16 | 109.1 |
| N1—C8—C9 | 115.8 (3) | C17—C16—H16 | 109.1 |
| C7—C8—C9 | 122.2 (3) | C12—C11—C10 | 109.6 (2) |
| N2—C10—C11 | 107.3 (2) | C12—C11—H11A | 109.8 |
| N2—C10—C18 | 113.8 (2) | C10—C11—H11A | 109.8 |
| C11—C10—C18 | 108.6 (2) | C12—C11—H11B | 109.8 |
| N2—C10—C17 | 108.5 (2) | C10—C11—H11B | 109.8 |
| C11—C10—C17 | 110.5 (2) | H11A—C11—H11B | 108.2 |
| C18—C10—C17 | 108.2 (2) | C5—C6—C7 | 119.4 (3) |
| O1—C1—Re1 | 177.7 (4) | C5—C6—H6 | 120.3 |
| N2—C9—C8 | 119.8 (3) | C7—C6—H6 | 120.3 |
| N2—C9—H9 | 120.1 | C19—C12—C13 | 109.8 (3) |
| C8—C9—H9 | 120.1 | C19—C12—C11 | 109.9 (3) |
| C6—C7—C8 | 118.7 (3) | C13—C12—C11 | 109.2 (3) |
| C6—C7—H7 | 120.7 | C19—C12—H12 | 109.3 |
| C8—C7—H7 | 120.7 | C13—C12—H12 | 109.3 |
| N1—C4—C5 | 122.9 (4) | C11—C12—H12 | 109.3 |
| N1—C4—H4 | 118.5 | C12—C13—C14 | 108.9 (3) |
| C5—C4—H4 | 118.5 | C12—C13—H13A | 109.9 |
| O3—C3—Re1 | 177.5 (3) | C14—C13—H13A | 109.9 |
| C10—C18—C14 | 109.5 (2) | C12—C13—H13B | 109.9 |
| C10—C18—H18A | 109.8 | C14—C13—H13B | 109.9 |
| C14—C18—H18A | 109.8 | H13A—C13—H13B | 108.3 |
| C4—N1—C8—C7 | −1.2 (5) | C10—C18—C14—C15 | 60.7 (3) |
| Re1—N1—C8—C7 | −179.4 (3) | C10—C18—C14—C13 | −60.3 (3) |
| C4—N1—C8—C9 | 178.6 (3) | C13—C14—C15—C16 | 60.5 (3) |
| Re1—N1—C8—C9 | 0.3 (3) | C18—C14—C15—C16 | −60.1 (4) |
| C9—N2—C10—C11 | 114.9 (3) | N1—C4—C5—C6 | 0.2 (6) |
| Re1—N2—C10—C11 | −59.7 (3) | C12—C19—C16—C15 | 59.8 (3) |
| C9—N2—C10—C18 | −5.3 (4) | C12—C19—C16—C17 | −61.2 (4) |
| Re1—N2—C10—C18 | −179.86 (19) | C14—C15—C16—C19 | −60.1 (3) |
| C9—N2—C10—C17 | −125.8 (3) | C14—C15—C16—C17 | 60.6 (3) |
| Re1—N2—C10—C17 | 59.7 (3) | C10—C17—C16—C19 | 59.6 (3) |
| C16—C17—C10—N2 | −175.5 (2) | C10—C17—C16—C15 | −61.6 (3) |
| C16—C17—C10—C11 | −58.2 (3) | N2—C10—C11—C12 | 175.8 (3) |
| C16—C17—C10—C18 | 60.6 (3) | C18—C10—C11—C12 | −60.7 (3) |
| C10—N2—C9—C8 | −177.0 (3) | C17—C10—C11—C12 | 57.8 (3) |
| Re1—N2—C9—C8 | −1.8 (4) | C4—C5—C6—C7 | −1.1 (6) |
| N1—C8—C9—N2 | 1.0 (4) | C8—C7—C6—C5 | 0.9 (5) |
| C7—C8—C9—N2 | −179.2 (3) | C16—C19—C12—C13 | −59.3 (4) |
| N1—C8—C7—C6 | 0.3 (5) | C16—C19—C12—C11 | 61.0 (4) |
| C9—C8—C7—C6 | −179.5 (3) | C10—C11—C12—C19 | −59.0 (4) |
| C8—N1—C4—C5 | 0.9 (5) | C10—C11—C12—C13 | 61.6 (4) |
| Re1—N1—C4—C5 | 178.9 (3) | C19—C12—C13—C14 | 59.6 (4) |
| N2—C10—C18—C14 | 179.4 (2) | C11—C12—C13—C14 | −61.1 (4) |
| C11—C10—C18—C14 | 60.0 (3) | C15—C14—C13—C12 | −60.6 (3) |
| C17—C10—C18—C14 | −60.0 (3) | C18—C14—C13—C12 | 60.5 (4) |
| H··· | ||||
| C9—H9···Cl1i | 0.93 | 2.76 | 3.523 (3) | 140 |
| C7—H7···Cl1i | 0.93 | 2.92 | 3.662 (4) | 137 |
| C18—H18 | 0.97 | 2.74 | 3.701 (3) | 170 |