Literature DB >> 27893960

Eukaryotic DNA Polymerases in Homologous Recombination.

Mitch McVey1, Varandt Y Khodaverdian1, Damon Meyer2,3, Paula Gonçalves Cerqueira2, Wolf-Dietrich Heyer2,4.   

Abstract

Homologous recombination (HR) is a central process to ensure genomic stability in somatic cells and during meiosis. HR-associated DNA synthesis determines in large part the fidelity of the process. A number of recent studies have demonstrated that DNA synthesis during HR is conservative, less processive, and more mutagenic than replicative DNA synthesis. In this review, we describe mechanistic features of DNA synthesis during different types of HR-mediated DNA repair, including synthesis-dependent strand annealing, break-induced replication, and meiotic recombination. We highlight recent findings from diverse eukaryotic organisms, including humans, that suggest both replicative and translesion DNA polymerases are involved in HR-associated DNA synthesis. Our focus is to integrate the emerging literature about DNA polymerase involvement during HR with the unique aspects of these repair mechanisms, including mutagenesis and template switching.

Entities:  

Keywords:  DNA synthesis; genome stability; mutagenesis; template switching

Mesh:

Substances:

Year:  2016        PMID: 27893960      PMCID: PMC5295669          DOI: 10.1146/annurev-genet-120215-035243

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  164 in total

1.  DNA polymerases: Biology, diseases and biomedical applications.

Authors:  Barbara van Loon; Roger Woodgate; Ulrich Hübscher
Journal:  DNA Repair (Amst)       Date:  2015-05

2.  Alternative recombination pathways in UV-irradiated XP variant cells.

Authors:  Charles L Limoli; E Giedzinski; J E Cleaver
Journal:  Oncogene       Date:  2005-05-26       Impact factor: 9.867

3.  Frequent Interchromosomal Template Switches during Gene Conversion in S. cerevisiae.

Authors:  Olga Tsaponina; James E Haber
Journal:  Mol Cell       Date:  2014-07-24       Impact factor: 17.970

4.  Structural basis of Rev1-mediated assembly of a quaternary vertebrate translesion polymerase complex consisting of Rev1, heterodimeric polymerase (Pol) ζ, and Pol κ.

Authors:  Jessica Wojtaszek; Chul-Jin Lee; Sanjay D'Souza; Brenda Minesinger; Hyungjin Kim; Alan D D'Andrea; Graham C Walker; Pei Zhou
Journal:  J Biol Chem       Date:  2012-08-02       Impact factor: 5.157

Review 5.  Mutations arising during repair of chromosome breaks.

Authors:  Anna Malkova; James E Haber
Journal:  Annu Rev Genet       Date:  2012       Impact factor: 16.830

6.  Evidence for the involvement of human DNA polymerase N in the repair of DNA interstrand cross-links.

Authors:  Laura Zietlow; Leigh Anne Smith; Mika Bessho; Tadayoshi Bessho
Journal:  Biochemistry       Date:  2009-12-15       Impact factor: 3.162

7.  Rad54 dissociates homologous recombination intermediates by branch migration.

Authors:  Dmitry V Bugreev; Fumio Hanaoka; Alexander V Mazin
Journal:  Nat Struct Mol Biol       Date:  2007-07-29       Impact factor: 15.369

8.  A genetic and structural study of genome rearrangements mediated by high copy repeat Ty1 elements.

Authors:  Jason E Chan; Richard D Kolodner
Journal:  PLoS Genet       Date:  2011-05-26       Impact factor: 5.917

9.  Chromosome rearrangements via template switching between diverged repeated sequences.

Authors:  Ranjith P Anand; Olga Tsaponina; Patricia W Greenwell; Cheng-Sheng Lee; Wei Du; Thomas D Petes; James E Haber
Journal:  Genes Dev       Date:  2014-11-01       Impact factor: 11.361

10.  Low-fidelity DNA synthesis by human DNA polymerase theta.

Authors:  Mercedes E Arana; Mineaki Seki; Richard D Wood; Igor B Rogozin; Thomas A Kunkel
Journal:  Nucleic Acids Res       Date:  2008-05-24       Impact factor: 16.971

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  62 in total

Review 1.  The role of fork stalling and DNA structures in causing chromosome fragility.

Authors:  Simran Kaushal; Catherine H Freudenreich
Journal:  Genes Chromosomes Cancer       Date:  2019-01-29       Impact factor: 5.006

2.  Loss of the p12 subunit of DNA polymerase delta leads to a defect in HR and sensitization to PARP inhibitors.

Authors:  Sufang Zhang; Hsiao Hsiang Chao; Xiaoxiao Wang; Zhongtao Zhang; Ernest Y C Lee; Marietta Y W T Lee
Journal:  DNA Repair (Amst)       Date:  2018-11-13

Review 3.  Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.

Authors:  Hannah L Klein; Kenny K H Ang; Michelle R Arkin; Emily C Beckwitt; Yi-Hsuan Chang; Jun Fan; Youngho Kwon; Michael J Morten; Sucheta Mukherjee; Oliver J Pambos; Hafez El Sayyed; Elizabeth S Thrall; João P Vieira-da-Rocha; Quan Wang; Shuang Wang; Hsin-Yi Yeh; Julie S Biteen; Peter Chi; Wolf-Dietrich Heyer; Achillefs N Kapanidis; Joseph J Loparo; Terence R Strick; Patrick Sung; Bennett Van Houten; Hengyao Niu; Eli Rothenberg
Journal:  Microb Cell       Date:  2019-01-07

4.  Mind the nick.

Authors:  Ralf Erik Wellinger
Journal:  Cell Cycle       Date:  2018-12-28       Impact factor: 4.534

Review 5.  Break induced replication in eukaryotes: mechanisms, functions, and consequences.

Authors:  Cynthia J Sakofsky; Anna Malkova
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-04-21       Impact factor: 8.250

Review 6.  Moving forward one step back at a time: reversibility during homologous recombination.

Authors:  Aurèle Piazza; Wolf-Dietrich Heyer
Journal:  Curr Genet       Date:  2019-05-23       Impact factor: 3.886

7.  Polymerase δ promotes chromosomal rearrangements and imprecise double-strand break repair.

Authors:  Jacob V Layer; Lydie Debaize; Alexandria Van Scoyk; Nealia C House; Alexander J Brown; Yunpeng Liu; Kristen E Stevenson; Michael Hemann; Steven A Roberts; Brendan D Price; David M Weinstock; Tovah A Day
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-19       Impact factor: 11.205

8.  Genetic Characterization of Three Distinct Mechanisms Supporting RNA-Driven DNA Repair and Modification Reveals Major Role of DNA Polymerase ζ.

Authors:  Chance Meers; Havva Keskin; Gabor Banyai; Olga Mazina; Taehwan Yang; Alli L Gombolay; Kuntal Mukherjee; Efiyenia I Kaparos; Gary Newnam; Alexander Mazin; Francesca Storici
Journal:  Mol Cell       Date:  2020-09-02       Impact factor: 17.970

Review 9.  Homologous recombination and the repair of DNA double-strand breaks.

Authors:  William Douglass Wright; Shanaya Shital Shah; Wolf-Dietrich Heyer
Journal:  J Biol Chem       Date:  2018-03-29       Impact factor: 5.157

10.  Regulation of hetDNA Length during Mitotic Double-Strand Break Repair in Yeast.

Authors:  Xiaoge Guo; Yee Fang Hum; Kevin Lehner; Sue Jinks-Robertson
Journal:  Mol Cell       Date:  2017-08-03       Impact factor: 17.970

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