Literature DB >> 27890923

The epigenetic landscape of renal cancer.

Mark R Morris1, Farida Latif2.   

Abstract

The majority of kidney cancers are associated with mutations in the von Hippel-Lindau gene and a small proportion are associated with infrequent mutations in other well characterized tumour-suppressor genes. In the past 15 years, efforts to uncover other key genes involved in renal cancer have identified many genes that are dysregulated or silenced via epigenetic mechanisms, mainly through methylation of promoter CpG islands or dysregulation of specific microRNAs. In addition, the advent of next-generation sequencing has led to the identification of several novel genes that are mutated in renal cancer, such as PBRM1, BAP1 and SETD2, which are all involved in histone modification and nucleosome and chromatin remodelling. In this Review, we discuss how altered DNA methylation, microRNA dysregulation and mutations in histone-modifying enzymes disrupt cellular pathways in renal cancers.

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Year:  2016        PMID: 27890923     DOI: 10.1038/nrneph.2016.168

Source DB:  PubMed          Journal:  Nat Rev Nephrol        ISSN: 1759-5061            Impact factor:   28.314


  246 in total

1.  The somatic genomic landscape of chromophobe renal cell carcinoma.

Authors:  Caleb F Davis; Christopher J Ricketts; Min Wang; Lixing Yang; Andrew D Cherniack; Hui Shen; Christian Buhay; Hyojin Kang; Sang Cheol Kim; Catherine C Fahey; Kathryn E Hacker; Gyan Bhanot; Dmitry A Gordenin; Andy Chu; Preethi H Gunaratne; Michael Biehl; Sahil Seth; Benny A Kaipparettu; Christopher A Bristow; Lawrence A Donehower; Eric M Wallen; Angela B Smith; Satish K Tickoo; Pheroze Tamboli; Victor Reuter; Laura S Schmidt; James J Hsieh; Toni K Choueiri; A Ari Hakimi; Lynda Chin; Matthew Meyerson; Raju Kucherlapati; Woong-Yang Park; A Gordon Robertson; Peter W Laird; Elizabeth P Henske; David J Kwiatkowski; Peter J Park; Margaret Morgan; Brian Shuch; Donna Muzny; David A Wheeler; W Marston Linehan; Richard A Gibbs; W Kimryn Rathmell; Chad J Creighton
Journal:  Cancer Cell       Date:  2014-08-21       Impact factor: 31.743

2.  Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value.

Authors:  Clare Stirzaker; Elena Zotenko; Jenny Z Song; Wenjia Qu; Shalima S Nair; Warwick J Locke; Andrew Stone; Nicola J Armstong; Mark D Robinson; Alexander Dobrovic; Kelly A Avery-Kiejda; Kate M Peters; Juliet D French; Sandra Stein; Darren J Korbie; Matt Trau; John F Forbes; Rodney J Scott; Melissa A Brown; Glenn D Francis; Susan J Clark
Journal:  Nat Commun       Date:  2015-02-02       Impact factor: 14.919

3.  The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma.

Authors:  Matthew Bott; Marie Brevet; Barry S Taylor; Shigeki Shimizu; Tatsuo Ito; Lu Wang; Jenette Creaney; Richard A Lake; Maureen F Zakowski; Boris Reva; Chris Sander; Robert Delsite; Simon Powell; Qin Zhou; Ronglai Shen; Adam Olshen; Valerie Rusch; Marc Ladanyi
Journal:  Nat Genet       Date:  2011-06-05       Impact factor: 38.330

4.  The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C.

Authors:  X Niu; T Zhang; L Liao; L Zhou; D J Lindner; M Zhou; B Rini; Q Yan; H Yang
Journal:  Oncogene       Date:  2011-07-04       Impact factor: 9.867

Review 5.  The SWI/SNF complex and cancer.

Authors:  D Reisman; S Glaros; E A Thompson
Journal:  Oncogene       Date:  2009-02-23       Impact factor: 9.867

Review 6.  Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer.

Authors:  Christoph Plass; Stefan M Pfister; Anders M Lindroth; Olga Bogatyrova; Rainer Claus; Peter Lichter
Journal:  Nat Rev Genet       Date:  2013-10-09       Impact factor: 53.242

7.  Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012.

Authors:  Jacques Ferlay; Isabelle Soerjomataram; Rajesh Dikshit; Sultan Eser; Colin Mathers; Marise Rebelo; Donald Maxwell Parkin; David Forman; Freddie Bray
Journal:  Int J Cancer       Date:  2014-10-09       Impact factor: 7.396

8.  Tumor-specific hypermethylation of epigenetic biomarkers, including SFRP1, predicts for poorer survival in patients from the TCGA Kidney Renal Clear Cell Carcinoma (KIRC) project.

Authors:  Christopher J Ricketts; Victoria K Hill; W Marston Linehan
Journal:  PLoS One       Date:  2014-01-15       Impact factor: 3.240

9.  Tumour specific promoter region methylation of the human homologue of the Drosophila Roundabout gene DUTT1 (ROBO1) in human cancers.

Authors:  Ashraf Dallol; Eva Forgacs; Alonso Martinez; Yoshitaka Sekido; Rosemary Walker; Takeshi Kishida; Pamela Rabbitts; Eamonn R Maher; John D Minna; Farida Latif
Journal:  Oncogene       Date:  2002-05-02       Impact factor: 9.867

10.  Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences.

Authors:  Sebastian Moran; Carles Arribas; Manel Esteller
Journal:  Epigenomics       Date:  2015-12-17       Impact factor: 4.778

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  41 in total

1.  Di-Ras2 promotes renal cell carcinoma formation by activating the mitogen-activated protein kinase pathway in the absence of von Hippel-Lindau protein.

Authors:  Hanyu Rao; Xuefeng Li; Min Liu; Jing Liu; Xiaoxue Li; Jin Xu; Li Li; Wei-Qiang Gao
Journal:  Oncogene       Date:  2020-03-11       Impact factor: 9.867

2.  The Histone Methyltransferase G9a Promotes Cholangiocarcinogenesis Through Regulation of the Hippo Pathway Kinase LATS2 and YAP Signaling Pathway.

Authors:  Wenbo Ma; Chang Han; Jinqiang Zhang; Kyoungsub Song; Weina Chen; Hyunjoo Kwon; Tong Wu
Journal:  Hepatology       Date:  2020-10-09       Impact factor: 17.425

3.  Epigenetic targeted therapy of stabilized BAP1 in ASXL1 gain-of-function mutated leukemia.

Authors:  Lu Wang; Noah Warren Birch; Zibo Zhao; Carson Meredith Nestler; Alexander Kazmer; Anthony Shilati; Alisha Blake; Patrick Alexander Ozark; Emily Jane Rendleman; Didi Zha; Caila Ann Ryan; Marc Alard Jonathan Morgan; Ali Shilatifard
Journal:  Nat Cancer       Date:  2021-05-25

4.  Abnormal expression and the significant prognostic value of aquaporins in clear cell renal cell carcinoma.

Authors:  Mingrui Li; Minxin He; Fangshi Xu; Yibing Guan; Juanhua Tian; Ziyan Wan; Haibin Zhou; Mei Gao; Tie Chong
Journal:  PLoS One       Date:  2022-03-04       Impact factor: 3.240

5.  miR-224 Controls Human Colorectal Cancer Cell Line HCT116 Proliferation by Targeting Smad4.

Authors:  Jinzhe Zhou; Muren Hu; Fei Wang; Meiyi Song; Qi Huang; Bujun Ge
Journal:  Int J Med Sci       Date:  2017-08-08       Impact factor: 3.738

Review 6.  Epigenome Aberrations: Emerging Driving Factors of the Clear Cell Renal Cell Carcinoma.

Authors:  Ali Mehdi; Yasser Riazalhosseini
Journal:  Int J Mol Sci       Date:  2017-08-16       Impact factor: 5.923

7.  Identification of clear cell renal cell carcinoma and oncocytoma using a three-gene promoter methylation panel.

Authors:  Ana Sílvia Pires-Luís; Pedro Costa-Pinheiro; Maria João Ferreira; Luís Antunes; Francisco Lobo; Jorge Oliveira; Rui Henrique; Carmen Jerónimo
Journal:  J Transl Med       Date:  2017-06-29       Impact factor: 5.531

8.  The suppressing role of miR-622 in renal cell carcinoma progression by down-regulation of CCL18/MAPK signal pathway.

Authors:  Tian Li; Xiangzhou Sun; Kewei Xu
Journal:  Cell Biosci       Date:  2018-03-02       Impact factor: 7.133

9.  LRRK2 is a candidate prognostic biomarker for clear cell renal cell carcinoma.

Authors:  Chunxiu Yang; Jingjing Pang; Jian Xu; He Pan; Yueying Li; Huainian Zhang; Huan Liu; Shu-Yuan Xiao
Journal:  Cancer Cell Int       Date:  2021-07-03       Impact factor: 5.722

10.  Aberrant DNA methylation of GATA binding protein 3 (GATA3), interleukin-4 (IL-4), and transforming growth factor-β (TGF-β) promoters in Behcet's disease.

Authors:  Yunyun Zhu; Yiguo Qiu; Hongsong Yu; Shenglan Yi; Wencheng Su; Aize Kijlstra; Peizeng Yang
Journal:  Oncotarget       Date:  2017-07-22
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