Literature DB >> 27864348

Systems Approaches to Cancer Biology.

Tenley C Archer1, Elana J Fertig2, Sara J C Gosline3, Marc Hafner4, Shannon K Hughes5, Brian A Joughin6, Aaron S Meyer7, Stephen R Piccolo8, Ayesha N Shajahan-Haq9.   

Abstract

Cancer systems biology aims to understand cancer as an integrated system of genes, proteins, networks, and interactions rather than an entity of isolated molecular and cellular components. The inaugural Systems Approaches to Cancer Biology Conference, cosponsored by the Association of Early Career Cancer Systems Biologists and the National Cancer Institute of the NIH, focused on the interdisciplinary field of cancer systems biology and the challenging cancer questions that are best addressed through the combination of experimental and computational analyses. Attendees found that elucidating the many molecular features of cancer inevitably reveals new forms of complexity and concluded that ensuring the reproducibility and impact of cancer systems biology studies will require widespread method and data sharing and, ultimately, the translation of important findings to the clinic. Cancer Res; 76(23); 6774-7. ©2016 AACR. ©2016 American Association for Cancer Research.

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Year:  2016        PMID: 27864348      PMCID: PMC5135591          DOI: 10.1158/0008-5472.CAN-16-1580

Source DB:  PubMed          Journal:  Cancer Res        ISSN: 0008-5472            Impact factor:   12.701


  18 in total

Review 1.  Reproducibility in science: improving the standard for basic and preclinical research.

Authors:  C Glenn Begley; John P A Ioannidis
Journal:  Circ Res       Date:  2015-01-02       Impact factor: 17.367

2.  Schedule-dependent interaction between anticancer treatments.

Authors:  Sheng-Hong Chen; William Forrester; Galit Lahav
Journal:  Science       Date:  2016-03-10       Impact factor: 47.728

3.  NDEx, the Network Data Exchange.

Authors:  Dexter Pratt; Jing Chen; David Welker; Ricardo Rivas; Rudolf Pillich; Vladimir Rynkov; Keiichiro Ono; Carol Miello; Lyndon Hicks; Sandor Szalma; Aleksandar Stojmirovic; Radu Dobrin; Michael Braxenthaler; Jan Kuentzer; Barry Demchak; Trey Ideker
Journal:  Cell Syst       Date:  2015-10-28       Impact factor: 10.304

4.  Cell-to-Cell Variation in p53 Dynamics Leads to Fractional Killing.

Authors:  Andrew L Paek; Julia C Liu; Alexander Loewer; William C Forrester; Galit Lahav
Journal:  Cell       Date:  2016-04-07       Impact factor: 41.582

5.  A cell-ECM screening method to predict breast cancer metastasis.

Authors:  L E Barney; E C Dandley; L E Jansen; N G Reich; A M Mercurio; S R Peyton
Journal:  Integr Biol (Camb)       Date:  2015-02       Impact factor: 2.192

6.  Network Architecture Predisposes an Enzyme to Either Pharmacologic or Genetic Targeting.

Authors:  Karin J Jensen; Christian B Moyer; Kevin A Janes
Journal:  Cell Syst       Date:  2016-02-24       Impact factor: 10.304

7.  Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.

Authors:  Larsson Omberg; Kyle Ellrott; Yuan Yuan; Cyriac Kandoth; Chris Wong; Michael R Kellen; Stephen H Friend; Josh Stuart; Han Liang; Adam A Margolin
Journal:  Nat Genet       Date:  2013-10       Impact factor: 38.330

8.  Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer.

Authors:  Adam Shlien; Keiran Raine; Fabio Fuligni; Roland Arnold; Serena Nik-Zainal; Serge Dronov; Lira Mamanova; Andrej Rosic; Young Seok Ju; Susanna L Cooke; Manasa Ramakrishna; Elli Papaemmanuil; Helen R Davies; Patrick S Tarpey; Peter Van Loo; David C Wedge; David R Jones; Sancha Martin; John Marshall; Elizabeth Anderson; Claire Hardy; Violetta Barbashina; Samuel A J R Aparicio; Torill Sauer; Øystein Garred; Anne Vincent-Salomon; Odette Mariani; Sandrine Boyault; Aquila Fatima; Anita Langerød; Åke Borg; Gilles Thomas; Andrea L Richardson; Anne-Lise Børresen-Dale; Kornelia Polyak; Michael R Stratton; Peter J Campbell
Journal:  Cell Rep       Date:  2016-08-04       Impact factor: 9.423

9.  Unmasking determinants of specificity in the human kinome.

Authors:  Pau Creixell; Antonio Palmeri; Chad J Miller; Hua Jane Lou; Cristina C Santini; Morten Nielsen; Benjamin E Turk; Rune Linding
Journal:  Cell       Date:  2015-09-17       Impact factor: 41.582

10.  Kinome-wide decoding of network-attacking mutations rewiring cancer signaling.

Authors:  Pau Creixell; Erwin M Schoof; Craig D Simpson; James Longden; Chad J Miller; Hua Jane Lou; Lara Perryman; Thomas R Cox; Nevena Zivanovic; Antonio Palmeri; Agata Wesolowska-Andersen; Manuela Helmer-Citterich; Jesper Ferkinghoff-Borg; Hiroaki Itamochi; Bernd Bodenmiller; Janine T Erler; Benjamin E Turk; Rune Linding
Journal:  Cell       Date:  2015-09-17       Impact factor: 41.582

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  9 in total

Review 1.  Redrawing therapeutic boundaries: microbiota and cancer.

Authors:  Jonathan Sholl; Gregory D Sepich-Poore; Rob Knight; Thomas Pradeu
Journal:  Trends Cancer       Date:  2021-11-26

2.  Targeting HIF1-alpha/miR-326/ITGA5 axis potentiates chemotherapy response in triple-negative breast cancer.

Authors:  Ridho Assidicky; Unal Metin Tokat; Ibrahim Oguzhan Tarman; Ozge Saatci; Pelin Gulizar Ersan; Umar Raza; Hasan Ogul; Yasser Riazalhosseini; Tolga Can; Ozgur Sahin
Journal:  Breast Cancer Res Treat       Date:  2022-03-25       Impact factor: 4.624

3.  A network modeling approach to elucidate drug resistance mechanisms and predict combinatorial drug treatments in breast cancer.

Authors:  Jorge Gómez Tejeda Zañudo; Maurizio Scaltriti; Réka Albert
Journal:  Cancer Converg       Date:  2017-12-29

Review 4.  Imaging and the completion of the omics paradigm in breast cancer.

Authors:  D Leithner; J V Horvat; R E Ochoa-Albiztegui; S Thakur; G Wengert; E A Morris; T H Helbich; K Pinker
Journal:  Radiologe       Date:  2018-11       Impact factor: 0.635

5.  Multi-Approach Bioinformatics Analysis of Curated Omics Data Provides a Gene Expression Panorama for Multiple Cancer Types.

Authors:  Bruno César Feltes; Joice de Faria Poloni; Itamar José Guimarães Nunes; Sara Socorro Faria; Marcio Dorn
Journal:  Front Genet       Date:  2020-11-23       Impact factor: 4.599

6.  Identification of CCNB2 as A Potential Non-Invasive Breast Cancer Biomarker in Peripheral Blood Mononuclear Cells Using The Systems Biology Approach.

Authors:  Raheleh Moradpoor; Hakimeh Zali; Ahmad Gharebaghian; Mohammad Esmaeil Akbari; Soheila Ajdari; Mona Salimi
Journal:  Cell J       Date:  2021-08-29       Impact factor: 2.479

7.  Cancer systems epidemiology: Overcoming misconceptions and integrating systems approaches into cancer research.

Authors:  Patricia L Mabry; Nicolaas P Pronk; Christopher I Amos; John S Witte; Patrick T Wedlock; Sarah M Bartsch; Bruce Y Lee
Journal:  PLoS Med       Date:  2022-06-17       Impact factor: 11.613

Review 8.  Clinical trial design: Past, present, and future in the context of big data and precision medicine.

Authors:  Allen Li; Raymond C Bergan
Journal:  Cancer       Date:  2020-09-15       Impact factor: 6.860

Review 9.  Circadian and Immunity Cycle Talk in Cancer Destination: From Biological Aspects to In Silico Analysis.

Authors:  Mina Mirian; Amirali Hariri; Mahtasadat Yadollahi; Mohammad Kohandel
Journal:  Cancers (Basel)       Date:  2022-03-20       Impact factor: 6.639

  9 in total

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