Literature DB >> 27839866

Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform.

Javier Fernandez-Martinez1, Seung Joong Kim2, Yi Shi3, Paula Upla4, Riccardo Pellarin5, Michael Gagnon6, Ilan E Chemmama2, Junjie Wang3, Ilona Nudelman1, Wenzhu Zhang3, Rosemary Williams1, William J Rice7, David L Stokes4, Daniel Zenklusen6, Brian T Chait8, Andrej Sali9, Michael P Rout10.   

Abstract

The last steps in mRNA export and remodeling are performed by the Nup82 complex, a large conserved assembly at the cytoplasmic face of the nuclear pore complex (NPC). By integrating diverse structural data, we have determined the molecular architecture of the native Nup82 complex at subnanometer precision. The complex consists of two compositionally identical multiprotein subunits that adopt different configurations. The Nup82 complex fits into the NPC through the outer ring Nup84 complex. Our map shows that this entire 14-MDa Nup82-Nup84 complex assembly positions the cytoplasmic mRNA export factor docking sites and messenger ribonucleoprotein (mRNP) remodeling machinery right over the NPC's central channel rather than on distal cytoplasmic filaments, as previously supposed. We suggest that this configuration efficiently captures and remodels exporting mRNP particles immediately upon reaching the cytoplasmic side of the NPC.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Nup4 complex; Nup82 complex; computational structural biology; cross-linking and mass spectrometry; electron microscopy; integrative structure determination; mRNA export; mRNP remodeling; nuclear pore complex; small-angle X-ray scattering

Mesh:

Substances:

Year:  2016        PMID: 27839866      PMCID: PMC5130164          DOI: 10.1016/j.cell.2016.10.028

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  66 in total

1.  Protein secondary structure prediction based on position-specific scoring matrices.

Authors:  D T Jones
Journal:  J Mol Biol       Date:  1999-09-17       Impact factor: 5.469

2.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

3.  Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1.

Authors:  Yi Ren; Hyuk-Soo Seo; Günter Blobel; André Hoelz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-24       Impact factor: 11.205

4.  The N-terminal domain of Nup159 forms a beta-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore.

Authors:  Christine S Weirich; Jan P Erzberger; James M Berger; Karsten Weis
Journal:  Mol Cell       Date:  2004-12-03       Impact factor: 17.970

5.  Cryo-electron tomography of clathrin-coated vesicles: structural implications for coat assembly.

Authors:  Yifan Cheng; Werner Boll; Tomas Kirchhausen; Stephen C Harrison; Thomas Walz
Journal:  J Mol Biol       Date:  2006-10-14       Impact factor: 5.469

6.  Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.

Authors:  Yi Shi; Javier Fernandez-Martinez; Elina Tjioe; Riccardo Pellarin; Seung Joong Kim; Rosemary Williams; Dina Schneidman-Duhovny; Andrej Sali; Michael P Rout; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2014-08-26       Impact factor: 5.911

7.  FoXS: a web server for rapid computation and fitting of SAXS profiles.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

8.  An essential role for hGle1 nucleocytoplasmic shuttling in mRNA export.

Authors:  Frederic Kendirgi; Dianne M Barry; Eric R Griffis; Maureen A Powers; Susan R Wente
Journal:  J Cell Biol       Date:  2003-03-31       Impact factor: 10.539

9.  Atomic structure of the Y complex of the nuclear pore.

Authors:  Kotaro Kelley; Kevin E Knockenhauer; Greg Kabachinski; Thomas U Schwartz
Journal:  Nat Struct Mol Biol       Date:  2015-03-30       Impact factor: 15.369

10.  The molecular mechanism of nuclear transport revealed by atomic-scale measurements.

Authors:  Loren E Hough; Kaushik Dutta; Samuel Sparks; Deniz B Temel; Alia Kamal; Jaclyn Tetenbaum-Novatt; Michael P Rout; David Cowburn
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

View more
  68 in total

1.  Bayesian Weighing of Electron Cryo-Microscopy Data for Integrative Structural Modeling.

Authors:  Massimiliano Bonomi; Samuel Hanot; Charles H Greenberg; Andrej Sali; Michael Nilges; Michele Vendruscolo; Riccardo Pellarin
Journal:  Structure       Date:  2018-11-01       Impact factor: 5.006

2.  Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.

Authors:  Brinda Vallat; Benjamin Webb; John D Westbrook; Andrej Sali; Helen M Berman
Journal:  Structure       Date:  2018-04-12       Impact factor: 5.006

3.  Development of a Novel Sulfoxide-Containing MS-Cleavable Homobifunctional Cysteine-Reactive Cross-Linker for Studying Protein-Protein Interactions.

Authors:  Craig B Gutierrez; Sarah A Block; Clinton Yu; Stephanie M Soohoo; Alexander S Huszagh; Scott D Rychnovsky; Lan Huang
Journal:  Anal Chem       Date:  2018-06-05       Impact factor: 6.986

4.  The catalytic mechanism of electron-bifurcating electron transfer flavoproteins (ETFs) involves an intermediary complex with NAD<sup/>.

Authors:  Gerrit J Schut; Nishya Mohamed-Raseek; Monika Tokmina-Lukaszewska; David W Mulder; Diep M N Nguyen; Gina L Lipscomb; John P Hoben; Angela Patterson; Carolyn E Lubner; Paul W King; John W Peters; Brian Bothner; Anne-Frances Miller; Michael W W Adams
Journal:  J Biol Chem       Date:  2018-12-19       Impact factor: 5.157

Review 5.  Protein Transport by the Nuclear Pore Complex: Simple Biophysics of a Complex Biomachine.

Authors:  Tijana Jovanovic-Talisman; Anton Zilman
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

6.  Mapping the native organization of the yeast nuclear pore complex using nuclear radial intensity measurements.

Authors:  Pascal Vallotton; Sasikumar Rajoo; Matthias Wojtynek; Evgeny Onischenko; Annemarie Kralt; Carina Patrizia Derrer; Karsten Weis
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

7.  The Role of Cohesiveness in the Permeability of the Spatial Assemblies of FG Nucleoporins.

Authors:  Chad Gu; Andrei Vovk; Tiantian Zheng; Rob D Coalson; Anton Zilman
Journal:  Biophys J       Date:  2019-03-07       Impact factor: 4.033

Review 8.  The Structure of the Nuclear Pore Complex (An Update).

Authors:  Daniel H Lin; André Hoelz
Journal:  Annu Rev Biochem       Date:  2019-03-18       Impact factor: 23.643

Review 9.  Principles for Integrative Structural Biology Studies.

Authors:  Michael P Rout; Andrej Sali
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

10.  Nup42 and IP6 coordinate Gle1 stimulation of Dbp5/DDX19B for mRNA export in yeast and human cells.

Authors:  Rebecca L Adams; Aaron C Mason; Laura Glass; Susan R Wente
Journal:  Traffic       Date:  2017-10-16       Impact factor: 6.215

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.