Literature DB >> 28700925

Protein Transport by the Nuclear Pore Complex: Simple Biophysics of a Complex Biomachine.

Tijana Jovanovic-Talisman1, Anton Zilman2.   

Abstract

In eukaryotic cells, transport of molecules between the nucleus and the cytoplasm is facilitated by highly selective and efficient biomachines known as nuclear pore complexes (NPCs). The structural details of NPCs vary across species, with many of their constituent proteins exhibiting relatively low sequence conservation; yet the NPC as a whole retains its general architecture and mechanism of action in all eukaryotes from yeast to humans. This functional conservation in the absence of precise molecular conservation suggests that many aspects of the NPC transport mechanism may be understood based on general biophysical considerations. Accordingly, some aspects of NPC function have been recapitulated in artificial nanochannel mimics, even though they lack certain molecular elements of the endogenous NPC. Herein, we review biophysical aspects of NPC architecture and function and cover recent progress in the field. We also review recent advances in man-made molecular filters inspired by NPCs, and their applications in nanotechnology. We conclude the review with an outlook on outstanding questions in the field and biomedical aspects of NPC transport.
Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 28700925      PMCID: PMC5510711          DOI: 10.1016/j.bpj.2017.05.024

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  71 in total

1.  Imaging of single-molecule translocation through nuclear pore complexes.

Authors:  Weidong Yang; Jeff Gelles; Siegfried M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-11       Impact factor: 11.205

2.  Synthetic mimic of selective transport through the nuclear pore complex.

Authors:  Yaron Caspi; David Zbaida; Hagai Cohen; Michael Elbaum
Journal:  Nano Lett       Date:  2008-10-25       Impact factor: 11.189

3.  Nanoscale mechanism of molecular transport through the nuclear pore complex as studied by scanning electrochemical microscopy.

Authors:  Jiyeon Kim; Anahita Izadyar; Nikoloz Nioradze; Shigeru Amemiya
Journal:  J Am Chem Soc       Date:  2013-01-30       Impact factor: 15.419

4.  Autonomy and robustness of translocation through the nuclear pore complex: a single-molecule study.

Authors:  Thomas Dange; David Grünwald; Antje Grünwald; Reiner Peters; Ulrich Kubitscheck
Journal:  J Cell Biol       Date:  2008-09-29       Impact factor: 10.539

5.  Charge as a selection criterion for translocation through the nuclear pore complex.

Authors:  Lucy J Colwell; Michael P Brenner; Katharina Ribbeck
Journal:  PLoS Comput Biol       Date:  2010-04-22       Impact factor: 4.475

6.  Artificial nanopores that mimic the transport selectivity of the nuclear pore complex.

Authors:  Tijana Jovanovic-Talisman; Jaclyn Tetenbaum-Novatt; Anna Sophia McKenney; Anton Zilman; Reiner Peters; Michael P Rout; Brian T Chait
Journal:  Nature       Date:  2008-12-21       Impact factor: 49.962

7.  Structural evidence for common ancestry of the nuclear pore complex and vesicle coats.

Authors:  Stephen G Brohawn; Nina C Leksa; Eric D Spear; Kanagalaghatta R Rajashankar; Thomas U Schwartz
Journal:  Science       Date:  2008-10-30       Impact factor: 47.728

8.  Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor.

Authors:  Jeffrey A DeGrasse; Kelly N DuBois; Damien Devos; T Nicolai Siegel; Andrej Sali; Mark C Field; Michael P Rout; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2009-06-13       Impact factor: 5.911

9.  Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines.

Authors:  Alessandro Ori; Niccolò Banterle; Murat Iskar; Amparo Andrés-Pons; Claudia Escher; Huy Khanh Bui; Lenore Sparks; Victor Solis-Mezarino; Oliver Rinner; Peer Bork; Edward A Lemke; Martin Beck
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

10.  In situ structural analysis of the human nuclear pore complex.

Authors:  Alexander von Appen; Jan Kosinski; Lenore Sparks; Alessandro Ori; Amanda L DiGuilio; Benjamin Vollmer; Marie-Therese Mackmull; Niccolo Banterle; Luca Parca; Panagiotis Kastritis; Katarzyna Buczak; Shyamal Mosalaganti; Wim Hagen; Amparo Andres-Pons; Edward A Lemke; Peer Bork; Wolfram Antonin; Joseph S Glavy; Khanh Huy Bui; Martin Beck
Journal:  Nature       Date:  2015-09-23       Impact factor: 49.962

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  20 in total

1.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

2.  The Role of Cohesiveness in the Permeability of the Spatial Assemblies of FG Nucleoporins.

Authors:  Chad Gu; Andrei Vovk; Tiantian Zheng; Rob D Coalson; Anton Zilman
Journal:  Biophys J       Date:  2019-03-07       Impact factor: 4.033

3.  Bound-State Diffusion due to Binding to Flexible Polymers in a Selective Biofilter.

Authors:  Laura Maguire; Meredith D Betterton; Loren E Hough
Journal:  Biophys J       Date:  2019-11-26       Impact factor: 4.033

4.  Nanocompartmentalization of the Nuclear Pore Lumen.

Authors:  Kai Huang; Mario Tagliazucchi; Sung Hyun Park; Yitzhak Rabin; Igal Szleifer
Journal:  Biophys J       Date:  2019-11-26       Impact factor: 4.033

5.  A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement.

Authors:  Patrick D Ellis Fisher; Qi Shen; Bernice Akpinar; Luke K Davis; Kenny Kwok Hin Chung; David Baddeley; Anđela Šarić; Thomas J Melia; Bart W Hoogenboom; Chenxiang Lin; C Patrick Lusk
Journal:  ACS Nano       Date:  2018-01-25       Impact factor: 15.881

6.  Crowding-induced phase separation of nuclear transport receptors in FG nucleoporin assemblies.

Authors:  Luke K Davis; Ian J Ford; Bart W Hoogenboom
Journal:  Elife       Date:  2022-01-31       Impact factor: 8.140

7.  Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment.

Authors:  Bart W Hoogenboom; Loren E Hough; Edward A Lemke; Roderick Y H Lim; Patrick R Onck; Anton Zilman
Journal:  Phys Rep       Date:  2021-03-24       Impact factor: 30.510

8.  Mechanical force application to the nucleus regulates nucleocytoplasmic transport.

Authors:  Ion Andreu; Ignasi Granero-Moya; Nimesh R Chahare; Kessem Clein; Marc Molina-Jordán; Amy E M Beedle; Alberto Elosegui-Artola; Juan F Abenza; Leone Rossetti; Xavier Trepat; Barak Raveh; Pere Roca-Cusachs
Journal:  Nat Cell Biol       Date:  2022-06-09       Impact factor: 28.213

9.  Physical modeling of multivalent interactions in the nuclear pore complex.

Authors:  Luke K Davis; Anđela Šarić; Bart W Hoogenboom; Anton Zilman
Journal:  Biophys J       Date:  2021-02-20       Impact factor: 4.033

Review 10.  One Ring to Rule them All? Structural and Functional Diversity in the Nuclear Pore Complex.

Authors:  Javier Fernandez-Martinez; Michael P Rout
Journal:  Trends Biochem Sci       Date:  2021-02-06       Impact factor: 14.264

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