Literature DB >> 27836639

Insights into inner ear-specific gene regulation: Epigenetics and non-coding RNAs in inner ear development and regeneration.

Angelika Doetzlhofer1, Karen B Avraham2.   

Abstract

The vertebrate inner ear houses highly specialized sensory organs, tuned to detect and encode sound, head motion and gravity. Gene expression programs under the control of transcription factors orchestrate the formation and specialization of the non-sensory inner ear labyrinth and its sensory constituents. More recently, epigenetic factors and non-coding RNAs emerged as an additional layer of gene regulation, both in inner ear development and disease. In this review, we provide an overview on how epigenetic modifications and non-coding RNAs, in particular microRNAs (miRNAs), influence gene expression and summarize recent discoveries that highlight their critical role in the proper formation of the inner ear labyrinth and its sensory organs. Finally, we discuss recent insights into how epigenetic factors and miRNAs may facilitate, or in the case of mammals, restrict inner ear sensory hair cell regeneration.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA methylation; Deafness; Hair cell regeneration; Histone modification; Inner ear development; microRNA

Mesh:

Substances:

Year:  2016        PMID: 27836639      PMCID: PMC5512292          DOI: 10.1016/j.semcdb.2016.11.002

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  175 in total

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Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 2.  Lysine-specific histone demethylase LSD1 and the dynamic control of chromatin.

Authors:  Thomas Rudolph; Stefanie Beuch; Gunter Reuter
Journal:  Biol Chem       Date:  2013-08       Impact factor: 3.915

3.  The avian inner ear. Continuous production of hair cells in vestibular sensory organs, but not in the auditory papilla.

Authors:  J M Jørgensen; C Mathiesen
Journal:  Naturwissenschaften       Date:  1988-06

Review 4.  lincRNAs: genomics, evolution, and mechanisms.

Authors:  Igor Ulitsky; David P Bartel
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

5.  A human homologue of the Drosophila eyes absent gene underlies branchio-oto-renal (BOR) syndrome and identifies a novel gene family.

Authors:  S Abdelhak; V Kalatzis; R Heilig; S Compain; D Samson; C Vincent; D Weil; C Cruaud; I Sahly; M Leibovici; M Bitner-Glindzicz; M Francis; D Lacombe; J Vigneron; R Charachon; K Boven; P Bedbeder; N Van Regemorter; J Weissenbach; C Petit
Journal:  Nat Genet       Date:  1997-02       Impact factor: 38.330

6.  Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin.

Authors:  Bernhard Lehnertz; Yoshihide Ueda; Alwin A H A Derijck; Ulrich Braunschweig; Laura Perez-Burgos; Stefan Kubicek; Taiping Chen; En Li; Thomas Jenuwein; Antoine H F M Peters
Journal:  Curr Biol       Date:  2003-07-15       Impact factor: 10.834

7.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

8.  Conserved microRNA pathway regulates developmental timing of retinal neurogenesis.

Authors:  Anna La Torre; Sean Georgi; Thomas A Reh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

9.  Dicer is essential for mouse development.

Authors:  Emily Bernstein; Sang Yong Kim; Michelle A Carmell; Elizabeth P Murchison; Heather Alcorn; Mamie Z Li; Alea A Mills; Stephen J Elledge; Kathryn V Anderson; Gregory J Hannon
Journal:  Nat Genet       Date:  2003-10-05       Impact factor: 38.330

10.  Histone demethylase KDM4B regulates otic vesicle invagination via epigenetic control of Dlx3 expression.

Authors:  Rosa A Uribe; Ailín L Buzzi; Marianne E Bronner; Pablo H Strobl-Mazzulla
Journal:  J Cell Biol       Date:  2015-11-23       Impact factor: 10.539

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  12 in total

1.  A spontaneous mouse deletion in Mctp1 uncovers a long-range cis-regulatory region crucial for NR2F1 function during inner ear development.

Authors:  Basile Tarchini; Chantal Longo-Guess; Cong Tian; Abigail L D Tadenev; Nicholas Devanney; Kenneth R Johnson
Journal:  Dev Biol       Date:  2018-09-11       Impact factor: 3.582

Review 2.  Outlook and future of inner ear therapy.

Authors:  Jenna Devare; Samuel Gubbels; Yehoash Raphael
Journal:  Hear Res       Date:  2018-05-17       Impact factor: 3.208

Review 3.  Approaches for the study of epigenetic modifications in the inner ear and related tissues.

Authors:  Bradley J Walters; Brandon C Cox
Journal:  Hear Res       Date:  2019-01-12       Impact factor: 3.208

Review 4.  Epigenetics in neuronal regeneration.

Authors:  Leah S VandenBosch; Thomas A Reh
Journal:  Semin Cell Dev Biol       Date:  2019-05-09       Impact factor: 7.727

5.  Transcriptomic and epigenomic analyses explore the potential role of H3K4me3 in neomycin-induced cochlear Lgr5+ progenitor cell regeneration of hair cells.

Authors:  Xiangyu Ma; Shasha Zhang; Shijie Qin; Jiamin Guo; Jia Yuan; Ruiying Qiang; Shan Zhou; Wei Cao; Jianming Yang; Fei Ma; Renjie Chai
Journal:  Hum Cell       Date:  2022-06-06       Impact factor: 4.174

6.  Single-cell transcriptome analysis reveals three sequential phases of gene expression during zebrafish sensory hair cell regeneration.

Authors:  Sungmin Baek; Nhung T T Tran; Daniel C Diaz; Ya-Yin Tsai; Joaquin Navajas Acedo; Mark E Lush; Tatjana Piotrowski
Journal:  Dev Cell       Date:  2022-03-21       Impact factor: 13.417

Review 7.  Recent advancements in understanding the role of epigenetics in the auditory system.

Authors:  Rahul Mittal; Nicole Bencie; George Liu; Nicolas Eshraghi; Eric Nisenbaum; Susan H Blanton; Denise Yan; Jeenu Mittal; Christine T Dinh; Juan I Young; Feng Gong; Xue Zhong Liu
Journal:  Gene       Date:  2020-07-29       Impact factor: 3.688

Review 8.  Epigenetic mechanisms of inner ear development.

Authors:  Vinodh Balendran; K Elaine Ritter; Donna M Martin
Journal:  Hear Res       Date:  2022-01-13       Impact factor: 3.672

Review 9.  Therapeutic Potential of Wnt and Notch Signaling and Epigenetic Regulation in Mammalian Sensory Hair Cell Regeneration.

Authors:  Anshula Samarajeewa; Bonnie E Jacques; Alain Dabdoub
Journal:  Mol Ther       Date:  2019-03-30       Impact factor: 11.454

10.  Sox2 haploinsufficiency primes regeneration and Wnt responsiveness in the mouse cochlea.

Authors:  Patrick J Atkinson; Yaodong Dong; Shuping Gu; Wenwen Liu; Elvis Huarcaya Najarro; Tomokatsu Udagawa; Alan G Cheng
Journal:  J Clin Invest       Date:  2018-03-19       Impact factor: 19.456

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