| Literature DB >> 27832212 |
Karl Kuchler1, Sabrina Jenull1, Raju Shivarathri1, Neeraj Chauhan2,3.
Abstract
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Mesh:
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Year: 2016 PMID: 27832212 PMCID: PMC5104479 DOI: 10.1371/journal.ppat.1005938
Source DB: PubMed Journal: PLoS Pathog ISSN: 1553-7366 Impact factor: 6.823
Conservation of genes in human fungal pathogens encoding histone modifiers.
| Catalytic subunit | Histone target |
| Virulence/ Fitness (mouse) | Other | Other fungal pathogens |
| Mammalian orthologue(s): modified residue | References |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
|
| H4K12 | TSA, SB, SAHA | - |
| Hos1 | HDAC3/HDAC1: all four core histones | [ | |
|
| specific for H3, H4 including H4K16, H4K12; in vitro: no KDAC activity? | MGCD290 (specific), TSA, SB, SAHA | attenuated (Set3) |
|
| Hos2 | HDAC3: all four core histones | [ |
|
| H4K12, H2BK16 |
| - |
|
| Hos3 | - | [ |
|
| all four core histones, except H4K16; nonhistone: HSP90 | TSA, SB, SAHA, Apicidin, VPA | - |
|
| Rpd3 | HDAC1/HDAC2: all four core histones | [ |
|
| all four core histones, except H4K16 | TSA, SB, SAHA, Apicidin | attenuated |
|
| Rpd3 | HDAC1/HDAC2: all four core histones | [ |
|
| specific for H3, H2B including H3K9, H3K18, H2BK16; nonhistone: HSP90 | TSA, SB, SAHA, Apicidin | - |
|
| Hda1 | HDAC6: all four core histones | [ |
|
| H3, H4 including H4K5 | NAM | - |
|
| Hst1 | SIRT1/SIRT3: H4K16, H3K9 | [ |
|
| H4K5, H4K12 | NAM | - |
|
| Hst2 | SIRT3/SIRT2: H4K16, H3K9 | [ |
|
| H3K56 | NAM | decreased |
|
| Hst3/Hst4 | SIRT3: H4K16 | [ |
|
| H4K16, H3K56 | Splitomycin (specific), NAM, Sirtinol | - |
|
| Hst1 (Blast Sir2 higher identity) | SIRT1: H4K16, H3K9 | [ |
|
| - | - | - |
|
| Hst2 | - | |
|
| ||||||||
|
| H3K4 | - | decreased |
|
| Set1 | SETD1a/SETD1b:H3K4 | [ |
|
| H3K36 | - | - |
|
| Set2 | SETD2: H3K36 | [ |
|
| H3K79 | - | - |
|
| Dot1 | DOT1L: H3K79 | [ |
|
| ||||||||
|
| H2BS10 | Hesperidin (developed for Mst1) | attenuated |
|
| Ste20 | MST1: H2B14 | [ |
|
| H2AS129 | - | - |
|
| Mec1 | ATM: H2AX139 | [ |
|
| H2AS129 | - | - |
|
| Tel1 | ATR: H2AX139 | [ |
|
| ||||||||
|
| H2A ( | - | competitive fitness normal |
|
| Pho13 | - | [ |
|
| ||||||||
|
| H2BK6, H3(K4, K9, K14, K18, K23, K27), H4K8 | Garcinol, Anacardic acid, CPTH2 | decreased |
|
| Gcn5 | KAT2A and KAT2B: H3K9, H3K14, H3K18, | [ |
|
| H2AK8, H4(K5, K12) | decreased |
|
| Hat1 | HAT1/KAT1: H2AK5, H4K5, H4K12 | [ | |
|
| H3K14, H4K8 |
|
| Elp3 | ELP3/KAT9: H3K14, H4K8 | [ | ||
|
| H3K14, H4(K5, K12) |
|
| Hpa2 | - | [ | ||
|
| H4K8 |
| Hpa3 | - | [ | |||
|
| H4K16 |
| Af, Fo, Cn | Nut1 | - | [ | ||
|
| H2A(K5, K8), H2B(K11, K16), H2AZ(K3, K8, K10, K14), H4(K5, K12, K16, K20) | NU 9056, MG149 |
|
| Esa1 | TIP60/KAT5: H3K14, H4K5, H4K8, H4K12, H4K16 | [ | |
|
| H4(K16, K20) |
|
| Sas2 | KAT8: H4K16, H4K5, H4K8 | [ | ||
|
| H3(K14, K23) |
|
| Sas3 | KAT6: H3K14 | [ | ||
|
| H2A, H4 |
|
| Nat4 | NAA40: H4, H2A | [ | ||
|
| H3, H4 |
|
| Taf1 | KAT4 | [ | ||
|
| H3K56 | Anacardic acid, CPTH6, C646 /CTPB+, TTK21+ | decreased |
|
| Rtt109 | p300: H3K56 | [ |
|
| H3(K9, K14, K18) |
|
| Sgf29 | SGF29: H3K14 | [ | ||
|
| H3K56 |
|
| Spt10 | - | [ |
Abbreviations: KDACs: lysine deacetylases; HMTs: histone methyltransferases; HDPH: histone dephosphorylase; KATs: lysine acetyltransferases; TSA: trichostatin A; SB: sodium butyrate; SAHA: suberoylanilide hydroxamic acid; VPA: valporic acid; NAM: nicotinamide; CPTH2: Cyclopentylidene-[4-(4-chlorophenyl)thiazol-2-yl)hydrazine; CPTH6: 3-methylcyclopentylidene-[4-(4'-chlorophenyl)thiazol-2-yl]hydrazine; NU9056: 5-(1,2-Thiazol-5-yldisulfanyl)-1,2-thiazole; MG149: 2-(4-Heptylphenethyl)-6-hydroxybenzoic acid; CTPB: N-[4-Chloro-3-(trifluoromethyl)phenyl]-2-ethoxy-6-pentadecylbenzamide; TTK21: N-(4-Chloro-3-trifluoromethyl-phenyl)-2-n-propoxy- benzamide; Ca: Candida albicans; Cg: Candida glabrata; Ct: Candida tropicalis; Cp: Candida parapsilosis Af: Aspergillus fumigatus; Cn: Cryptococcus neoformans; Fo: Fusarium oxysporum; Hc: Histoplasma capsulatum.
Source for orthologues in Candida spp.: Candida genome database (CGD) http://www.candidagenome.org/; Source for orthologues in other fungal pathogens: blast performed at EnsemblFungi http://fungi.ensembl.org/index.html, Saccharomyces genome database (SGD) http://www.yeastgenome.org/ and CGD.
a: In Sc Sir2 is a paralog of Hst1. All blast hits from other fungal pathogens showed higher identity to CaHst1 than to CaSir2.
+ KAT activators.
* majority of targets are cytoplasmatic [34].
** Most of the inhibitors/activators for respective mammalian KATs.
Fig 1Histone modification by lysine acetylation through writers (KATs) and erasers (KDACs).
Much of the mechanistic knowledge about the role of chromatin modifications in gene expression regulation comes from the nonpathogenic baker’s yeast (for excellent recent reviews, see [65–67]). Although the precise mechanisms of the interplay between writers, readers, and erasers remain ill-defined in many cases, it is fair to speculate that histone modifiers may play pivotal roles in the adaption of fungal pathogens to host immune defense. The major nucleosome building blocks, histones H2A, H2B, H3, and H4, are subject to dynamic and reversible posttranslational modifications (PTMs) by several KATs and KDACs functioning as writers and erasers of epigenetic marks. KATs like the Rtt109, which is a fungal-specific writer, and the cognate Hst3 eraser recognize the lysine residue K56 on histone H3. The KAT Esa1 acts primarily on H2A/H2B and H2AZ, with Hda1 and Hos3 acting as erasers (Panel A). By contrast, Hat1 targets mainly, though not exclusively, newly synthesized cytoplasmic histone H4 for the purpose of nuclear nucleosome remodeling during DNA damage repair [37], as well as other processes demanding nucleosome exchange. The pleiotropic KAT Gcn5 acts mainly on histone H4 and H3. Each N-terminal histone lysine can be recognized by several redundant KATs/KDACs. Histone H3 and H4 are modified by several writers and erasers in C. albicans, creating extensive combinatorial complexity and many possibilities for gene regulation depending on the cellular context. For example, the KDACs, Rpd3/31, Hda1, and the SET3C complex consisting of Set3 and Hos2 [29] act mainly on histone H3 and H4 (Panel B). Notably, kinases such as Cst20 (Panel A) and histone methyltransferases such as Dot1 and Set2 show restricted lysine specificities for histone H2B and H3, respectively. Panel C: A number of modulators of KATs/KDACs modulate (inhibit or activate) several KATs/KDACs, whereas others appear enzyme specific. Of note, no activator for KDACs have been identified for fungal KDACs, although several are known for mammalian KDACs [56,83,87,96,104,112,121,141,155–157,162–165]. TSA, trichostatin A; SB, sodium butyrate; SAHA, suberoylanilide hydroxamic acid; VPA, valporic acid; NAM, nicotinamide; CPTH2, Cyclopentylidene-[4-(4-chlorophenyl)thiazol-2-yl)hydrazine; CPTH6, 3-methylcyclopentylidene-[4-(4'-chlorophenyl)thiazol-2-yl]hydrazine; NU9056, 5-(1,2-Thiazol-5-yldisulfanyl)-1,2-thiazole; MG149, 2-(4-Heptylphenethyl)-6-hydroxybenzoic acid; CTPB, N-[4-Chloro-3-(trifluoromethyl)phenyl]-2-ethoxy-6-pentadecylbenzamide; TTK21, N-(4-Chloro-3-trifluoromethyl-phenyl)-2-n-propoxy- benzamide; HDPHs, histone dephoshorlyases; HMTs, histone methyltransferases; KATs, lysine acetyltransferases; KDACs, lysine deacetylases. Red boxes, fungal-specific modifications; grey circles, evolutionary conserved lysines in histone tails; orange ellipses, writer KATs; yellow ellipses, eraser KDACs; blue ellipses, histone dephosphorylases; cyan ellipses, histone kinases; green ellipses, histone methyltransferases.