Literature DB >> 27820806

Large-scale ATP-independent nucleosome unfolding by a histone chaperone.

Maria E Valieva1, Grigoriy A Armeev1, Kseniya S Kudryashova1,2, Nadezhda S Gerasimova1, Alexey K Shaytan1, Olga I Kulaeva1,3, Laura L McCullough4, Tim Formosa4, Pavel G Georgiev5, Mikhail P Kirpichnikov1,2, Vasily M Studitsky1,3,5, Alexey V Feofanov1,2.   

Abstract

DNA accessibility to regulatory proteins is substantially influenced by nucleosome structure and dynamics. The facilitates chromatin transcription (FACT) complex increases the accessibility of nucleosomal DNA, but the mechanism and extent of its nucleosome reorganization activity are unknown. Here we determined the effects of FACT from the yeast Saccharomyces cerevisiae on single nucleosomes by using single-particle Förster resonance energy transfer (spFRET) microscopy. FACT binding results in dramatic ATP-independent, symmetrical and reversible DNA uncoiling that affects at least 70% of the DNA within a nucleosome, occurs without apparent loss of histones and proceeds via an 'all-or-none' mechanism. A mutated version of FACT is defective in uncoiling, and a histone mutation that suppresses phenotypes caused by this FACT mutation in vivo restores the uncoiling activity in vitro. Thus, FACT-dependent nucleosome unfolding modulates the accessibility of nucleosomal DNA, and this activity is an important function of FACT in vivo.

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Year:  2016        PMID: 27820806      PMCID: PMC5518926          DOI: 10.1038/nsmb.3321

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   18.361


  50 in total

1.  Multiple Nhp6 molecules are required to recruit Spt16-Pob3 to form yFACT complexes and to reorganize nucleosomes.

Authors:  Susan Ruone; Alison R Rhoades; Tim Formosa
Journal:  J Biol Chem       Date:  2003-09-01       Impact factor: 5.157

2.  Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication.

Authors:  Adil Jamai; Rachel Maria Imoberdorf; Michel Strubin
Journal:  Mol Cell       Date:  2007-02-09       Impact factor: 17.970

Review 3.  FACT and the reorganized nucleosome.

Authors:  Tim Formosa
Journal:  Mol Biosyst       Date:  2008-09-19

4.  A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription.

Authors:  N K Brewster; G C Johnston; R A Singer
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

5.  The role of FACT in making and breaking nucleosomes.

Authors:  Tim Formosa
Journal:  Biochim Biophys Acta       Date:  2011-07-23

Review 6.  de FACTo nucleosome dynamics.

Authors:  Danny Reinberg; Robert J Sims
Journal:  J Biol Chem       Date:  2006-06-09       Impact factor: 5.157

7.  The yeast FACT complex has a role in transcriptional initiation.

Authors:  Debabrata Biswas; Yaxin Yu; Matthew Prall; Tim Formosa; David J Stillman
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

Review 8.  Mechanism of transcription through a nucleosome by RNA polymerase II.

Authors:  Olga I Kulaeva; Fu-Kai Hsieh; Han-Wen Chang; Donal S Luse; Vasily M Studitsky
Journal:  Biochim Biophys Acta       Date:  2012-09-06

9.  FACT and Asf1 regulate nucleosome dynamics and coactivator binding at the HO promoter.

Authors:  Shinya Takahata; Yaxin Yu; David J Stillman
Journal:  Mol Cell       Date:  2009-05-14       Impact factor: 17.970

10.  Nucleosome accessibility governed by the dimer/tetramer interface.

Authors:  Vera Böhm; Aaron R Hieb; Andrew J Andrews; Alexander Gansen; Andrea Rocker; Katalin Tóth; Karolin Luger; Jörg Langowski
Journal:  Nucleic Acids Res       Date:  2010-12-21       Impact factor: 16.971

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  36 in total

Review 1.  Fly Fishing for Histones: Catch and Release by Histone Chaperone Intrinsically Disordered Regions and Acidic Stretches.

Authors:  Christopher Warren; David Shechter
Journal:  J Mol Biol       Date:  2017-06-10       Impact factor: 5.469

2.  Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae.

Authors:  Laura L McCullough; Trang H Pham; Timothy J Parnell; Zaily Connell; Mahesh B Chandrasekharan; David J Stillman; Tim Formosa
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

3.  Transcription Promotes the Interaction of the FAcilitates Chromatin Transactions (FACT) Complex with Nucleosomes in Saccharomyces cerevisiae.

Authors:  Benjamin J E Martin; Adam T Chruscicki; LeAnn J Howe
Journal:  Genetics       Date:  2018-09-20       Impact factor: 4.562

4.  Thinking Outside the Cell: Replicating Replication In Vitro.

Authors:  Rhiannon R Aguilar; Jessica K Tyler
Journal:  Mol Cell       Date:  2017-01-05       Impact factor: 17.970

5.  Charged residues on the side of the nucleosome contribute to normal Spt16-gene interactions in budding yeast.

Authors:  Eugene Nyamugenda; A Brandon Cox; Jacob B Pierce; Ryan C Banning; Michelle L Huynh; Catey May; Sarah Marshall; Claire E Turkal; Andrea A Duina
Journal:  Epigenetics       Date:  2018-02-08       Impact factor: 4.528

6.  Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization.

Authors:  Laura L McCullough; Zaily Connell; Hua Xin; Vasily M Studitsky; Alexey V Feofanov; Maria E Valieva; Tim Formosa
Journal:  J Biol Chem       Date:  2018-03-07       Impact factor: 5.157

7.  Histone Chaperone FACT and Curaxins: Effects on Genome Structure and Function.

Authors:  Han-Wen Chang; Ekaterina V Nizovtseva; Sergey V Razin; Tim Formosa; Katerina V Gurova; Vasily M Studitsky
Journal:  J Cancer Metastasis Treat       Date:  2019-11-29

Review 8.  Structure and function of the histone chaperone FACT - Resolving FACTual issues.

Authors:  Katerina Gurova; Han-Wen Chang; Maria E Valieva; Poorva Sandlesh; Vasily M Studitsky
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2018-07-25       Impact factor: 4.490

9.  Chromatin replication: TRANSmitting the histone code.

Authors:  Han-Wen Chang; Vasily M Studitsky
Journal:  J Nat Sci       Date:  2017-02

10.  Molecular mechanisms of eukaryotic origin initiation, replication fork progression, and chromatin maintenance.

Authors:  Zuanning Yuan; Huilin Li
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

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