Literature DB >> 27820802

Inhibition of RAS function through targeting an allosteric regulatory site.

Russell Spencer-Smith1,2,3, Akiko Koide4,5,6, Yong Zhou7, Raphael R Eguchi4, Fern Sha4, Priyanka Gajwani1,2, Dianicha Santana1,2, Ankit Gupta4,5, Miranda Jacobs1,2, Erika Herrero-Garcia1,2,3, Jacqueline Cobbert1,2, Hugo Lavoie8, Matthew Smith9, Thanashan Rajakulendran10,11,12, Evan Dowdell4, Mustafa Nazir Okur1,2, Irina Dementieva4, Frank Sicheri10,11,12, Marc Therrien8, John F Hancock7, Mitsuhiko Ikura9, Shohei Koide4,5,13, John P O'Bryan1,2,3.   

Abstract

RAS GTPases are important mediators of oncogenesis in humans. However, pharmacological inhibition of RAS has proved challenging. Here we describe a functionally critical region, located outside the effector lobe of RAS, that can be targeted for inhibition. We developed NS1, a synthetic binding protein (monobody) that bound with high affinity to both GTP- and GDP-bound states of H-RAS and K-RAS but not N-RAS. NS1 potently inhibited growth factor signaling and oncogenic H-RAS- and K-RAS-mediated signaling and transformation but did not block oncogenic N-RAS, BRAF or MEK1. NS1 bound the α4-β6-α5 region of RAS, which disrupted RAS dimerization and nanoclustering and led to blocking of CRAF-BRAF heterodimerization and activation. These results establish the importance of the α4-β6-α5 interface in RAS-mediated signaling and define a previously unrecognized site in RAS for inhibiting RAS function.

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Year:  2016        PMID: 27820802      PMCID: PMC5193369          DOI: 10.1038/nchembio.2231

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  59 in total

1.  Nonradioactive determination of Ras-GTP levels using activated ras interaction assay.

Authors:  S J Taylor; R J Resnick; D Shalloway
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Structural evidence for feedback activation by Ras.GTP of the Ras-specific nucleotide exchange factor SOS.

Authors:  S Mariana Margarit; Holger Sondermann; Brian E Hall; Bhushan Nagar; Andre Hoelz; Michelle Pirruccello; Dafna Bar-Sagi; John Kuriyan
Journal:  Cell       Date:  2003-03-07       Impact factor: 41.582

3.  Target-binding proteins based on the 10th human fibronectin type III domain (¹⁰Fn3).

Authors:  Shohei Koide; Akiko Koide; Daša Lipovšek
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

Review 4.  Drugging the undruggable RAS: Mission possible?

Authors:  Adrienne D Cox; Stephen W Fesik; Alec C Kimmelman; Ji Luo; Channing J Der
Journal:  Nat Rev Drug Discov       Date:  2014-10-17       Impact factor: 84.694

5.  SIGNAL TRANSDUCTION. Membrane potential modulates plasma membrane phospholipid dynamics and K-Ras signaling.

Authors:  Yong Zhou; Ching-On Wong; Kwang-jin Cho; Dharini van der Hoeven; Hong Liang; Dhananiay P Thakur; Jialie Luo; Milos Babic; Konrad E Zinsmaier; Michael X Zhu; Hongzhen Hu; Kartik Venkatachalam; John F Hancock
Journal:  Science       Date:  2015-08-21       Impact factor: 47.728

6.  Teaching an old scaffold new tricks: monobodies constructed using alternative surfaces of the FN3 scaffold.

Authors:  Akiko Koide; John Wojcik; Ryan N Gilbreth; Robert J Hoey; Shohei Koide
Journal:  J Mol Biol       Date:  2011-12-16       Impact factor: 5.469

7.  Small Molecule Inhibition of ERK Dimerization Prevents Tumorigenesis by RAS-ERK Pathway Oncogenes.

Authors:  Ana Herrero; Adán Pinto; Paula Colón-Bolea; Berta Casar; Mary Jones; Lorena Agudo-Ibáñez; Rebeca Vidal; Stephan P Tenbaum; Paolo Nuciforo; Elsa M Valdizán; Zoltan Horvath; Laszlo Orfi; Antonio Pineda-Lucena; Emilie Bony; Gyorgy Keri; Germán Rivas; Angel Pazos; Rafael Gozalbes; Héctor G Palmer; Adam Hurlstone; Piero Crespo
Journal:  Cancer Cell       Date:  2015-08-10       Impact factor: 31.743

8.  The structural basis for the transition from Ras-GTP to Ras-GDP.

Authors:  Brian E Hall; Dafna Bar-Sagi; Nicolas Nassar
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-04       Impact factor: 11.205

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  118 in total

Review 1.  RAS-targeted therapies: is the undruggable drugged?

Authors:  Amanda R Moore; Scott C Rosenberg; Frank McCormick; Shiva Malek
Journal:  Nat Rev Drug Discov       Date:  2020-06-11       Impact factor: 84.694

2.  A KRAS GTPase K104Q Mutant Retains Downstream Signaling by Offsetting Defects in Regulation.

Authors:  Guowei Yin; Samantha Kistler; Samuel D George; Nora Kuhlmann; Leslie Garvey; Minh Huynh; Rachel K Bagni; Michael Lammers; Channing J Der; Sharon L Campbell
Journal:  J Biol Chem       Date:  2017-01-30       Impact factor: 5.157

Review 3.  Inhibition of Nonfunctional Ras.

Authors:  Ruth Nussinov; Hyunbum Jang; Attila Gursoy; Ozlem Keskin; Vadim Gaponenko
Journal:  Cell Chem Biol       Date:  2021-01-12       Impact factor: 8.116

Review 4.  Biology, pathology, and therapeutic targeting of RAS.

Authors:  J Matthew Rhett; Imran Khan; John P O'Bryan
Journal:  Adv Cancer Res       Date:  2020-07-09       Impact factor: 6.242

5.  Ras Variant Biology and Contributions to Human Disease.

Authors:  Ian Prior
Journal:  Methods Mol Biol       Date:  2021

Review 6.  Targeting Ras with Macromolecules.

Authors:  Dehua Pei; Kuangyu Chen; Hui Liao
Journal:  Cold Spring Harb Perspect Med       Date:  2018-03-01       Impact factor: 6.915

7.  Targeting the α4-α5 interface of RAS results in multiple levels of inhibition.

Authors:  Russell Spencer-Smith; Lie Li; Sheela Prasad; Akiko Koide; Shohei Koide; John P O'Bryan
Journal:  Small GTPases       Date:  2017-12-31

8.  Generating FN3-Based Affinity Reagents Through Phage Display.

Authors:  Kevin Gorman; Jennifer McGinnis; Brian Kay
Journal:  Curr Protoc Chem Biol       Date:  2018-06-07

Review 9.  Protein-Catalyzed Capture Agents.

Authors:  Heather D Agnew; Matthew B Coppock; Matthew N Idso; Bert T Lai; JingXin Liang; Amy M McCarthy-Torrens; Carmen M Warren; James R Heath
Journal:  Chem Rev       Date:  2019-03-06       Impact factor: 60.622

10.  Inhibition of RAS: proven and potential vulnerabilities.

Authors:  Mariyam Zuberi; Imran Khan; John P O'Bryan
Journal:  Biochem Soc Trans       Date:  2020-10-30       Impact factor: 5.407

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