Literature DB >> 27818000

Lack of evidence for a role of genetic variation in TMEM230 in the risk for Parkinson's disease in the Caucasian population.

Anamika Giri1, Kin Y Mok2, Iris Jansen3, Manu Sharma4, Christelle Tesson5, Graziella Mangone5, Suzanne Lesage5, José M Bras2, Joshua M Shulman6, Una-Marie Sheerin2, Mónica Díez-Fairen7, Pau Pastor7, María José Martí8, Mario Ezquerra8, Eduardo Tolosa8, Leonor Correia-Guedes9, Joaquim Ferreira10, Najaf Amin11, Cornelia M van Duijn11, Jeroen van Rooij12, André G Uitterlinden13, Robert Kraaij14, Michael Nalls15, Javier Simón-Sánchez16.   

Abstract

Mutations in TMEM230 have recently been associated to Parkinson's disease (PD). To further understand the role of this gene in the Caucasian population, we interrogated our large repository of next generation sequencing data from unrelated PD cases and controls, as well as multiplex families with autosomal dominant PD. We identified 2 heterozygous missense variants in 2 unrelated PD cases and not in our control database (p.Y106H and p.I162V), and a heterozygous missense variant in 2 PD cases from the same family (p.A163T). However, data presented herein is not sufficient to support the role of any of these variants in PD pathology. A series of unified sequence kernel association tests also failed to show a cumulative effect of rare variation in this gene on the risk of PD in the general Caucasian population. Further evaluation of genetic data from different populations is needed to understand the genetic role of TMEM230 in PD etiology.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  IPDGC; Mutation screening; Parkinson's disease; Rotterdam Study Exome Sequencing Database; SKAT-O; TMEM230

Mesh:

Substances:

Year:  2016        PMID: 27818000      PMCID: PMC5812479          DOI: 10.1016/j.neurobiolaging.2016.10.004

Source DB:  PubMed          Journal:  Neurobiol Aging        ISSN: 0197-4580            Impact factor:   4.673


  8 in total

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Journal:  Eur J Epidemiol       Date:  2015-09-19       Impact factor: 8.082

2.  The Rotterdam Study: 2014 objectives and design update.

Authors:  Albert Hofman; Sarwa Darwish Murad; Cornelia M van Duijn; Oscar H Franco; André Goedegebure; M Arfan Ikram; Caroline C W Klaver; Tamar E C Nijsten; Robin P Peeters; Bruno H Ch Stricker; Henning W Tiemeier; André G Uitterlinden; Meike W Vernooij
Journal:  Eur J Epidemiol       Date:  2013-11-21       Impact factor: 8.082

3.  Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studies.

Authors:  Seunggeun Lee; Mary J Emond; Michael J Bamshad; Kathleen C Barnes; Mark J Rieder; Deborah A Nickerson; David C Christiani; Mark M Wurfel; Xihong Lin
Journal:  Am J Hum Genet       Date:  2012-08-02       Impact factor: 11.025

4.  Two large British kindreds with familial Parkinson's disease: a clinico-pathological and genetic study.

Authors:  D J Nicholl; J R Vaughan; N L Khan; S L Ho; D E W Aldous; S Lincoln; M Farrer; J D Gayton; M B Davis; P Piccini; S E Daniel; G G Lennox; D J Brooks; A C Williams; N W Wood
Journal:  Brain       Date:  2002-01       Impact factor: 13.501

5.  The Rotterdam Scan Study: design and update up to 2012.

Authors:  M Arfan Ikram; Aad van der Lugt; Wiro J Niessen; Gabriel P Krestin; Peter J Koudstaal; Albert Hofman; Monique M B Breteler; Meike W Vernooij
Journal:  Eur J Epidemiol       Date:  2011-10-16       Impact factor: 8.082

6.  Actionable exomic incidental findings in 6503 participants: challenges of variant classification.

Authors:  Laura M Amendola; Michael O Dorschner; Peggy D Robertson; Joseph S Salama; Ragan Hart; Brian H Shirts; Mitzi L Murray; Mari J Tokita; Carlos J Gallego; Daniel Seung Kim; James T Bennett; David R Crosslin; Jane Ranchalis; Kelly L Jones; Elisabeth A Rosenthal; Ella R Jarvik; Andy Itsara; Emily H Turner; Daniel S Herman; Jennifer Schleit; Amber Burt; Seema M Jamal; Jenica L Abrudan; Andrew D Johnson; Laura K Conlin; Matthew C Dulik; Avni Santani; Danielle R Metterville; Melissa Kelly; Ann Katherine M Foreman; Kristy Lee; Kent D Taylor; Xiuqing Guo; Kristy Crooks; Lesli A Kiedrowski; Leslie J Raffel; Ora Gordon; Kalotina Machini; Robert J Desnick; Leslie G Biesecker; Steven A Lubitz; Surabhi Mulchandani; Greg M Cooper; Steven Joffe; C Sue Richards; Yaoping Yang; Jerome I Rotter; Stephen S Rich; Christopher J O'Donnell; Jonathan S Berg; Nancy B Spinner; James P Evans; Stephanie M Fullerton; Kathleen A Leppig; Robin L Bennett; Thomas Bird; Virginia P Sybert; William M Grady; Holly K Tabor; Jerry H Kim; Michael J Bamshad; Benjamin Wilfond; Arno G Motulsky; C Ronald Scott; Colin C Pritchard; Tom D Walsh; Wylie Burke; Wendy H Raskind; Peter Byers; Fuki M Hisama; Heidi Rehm; Debbie A Nickerson; Gail P Jarvik
Journal:  Genome Res       Date:  2015-01-30       Impact factor: 9.043

7.  A general framework for estimating the relative pathogenicity of human genetic variants.

Authors:  Martin Kircher; Daniela M Witten; Preti Jain; Brian J O'Roak; Gregory M Cooper; Jay Shendure
Journal:  Nat Genet       Date:  2014-02-02       Impact factor: 38.330

8.  Identification of TMEM230 mutations in familial Parkinson's disease.

Authors:  Han-Xiang Deng; Yong Shi; Yi Yang; Kreshnik B Ahmeti; Nimrod Miller; Cao Huang; Lijun Cheng; Hong Zhai; Sheng Deng; Karen Nuytemans; Nicola J Corbett; Myung Jong Kim; Hao Deng; Beisha Tang; Ziquang Yang; Yanming Xu; Piu Chan; Bo Huang; Xiao-Ping Gao; Zhi Song; Zhenhua Liu; Faisal Fecto; Nailah Siddique; Tatiana Foroud; Joseph Jankovic; Bernardino Ghetti; Daniel A Nicholson; Dimitri Krainc; Onur Melen; Jeffery M Vance; Margaret A Pericak-Vance; Yong-Chao Ma; Ali H Rajput; Teepu Siddique
Journal:  Nat Genet       Date:  2016-06-06       Impact factor: 38.330

  8 in total
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1.  Excessive burden of lysosomal storage disorder gene variants in Parkinson's disease.

Authors:  Laurie A Robak; Iris E Jansen; Jeroen van Rooij; André G Uitterlinden; Robert Kraaij; Joseph Jankovic; Peter Heutink; Joshua M Shulman
Journal:  Brain       Date:  2017-12-01       Impact factor: 13.501

Review 2.  Genetics of Parkinson's disease: An introspection of its journey towards precision medicine.

Authors:  Sara Bandres-Ciga; Monica Diez-Fairen; Jonggeol Jeff Kim; Andrew B Singleton
Journal:  Neurobiol Dis       Date:  2020-01-25       Impact factor: 5.996

3.  TMEM230 Mutations Are Rare in Han Chinese Patients with Autosomal Dominant Parkinson's Disease.

Authors:  Qianqian Wei; Ruwei Ou; Qingqing Zhou; Yongping Chen; Bei Cao; Xiaojing Gu; Bi Zhao; Ying Wu; Wei Song; Hui-Fang Shang
Journal:  Mol Neurobiol       Date:  2017-04-28       Impact factor: 5.590

4.  TMEM230 in Parkinson's disease.

Authors:  Laura Ibanez; Umber Dube; John Budde; Kathleen Black; Alexandra Medvedeva; Albert A Davis; Joel S Perlmutter; Bruno A Benitez; Carlos Cruchaga
Journal:  Neurobiol Aging       Date:  2017-03-16       Impact factor: 4.673

Review 5.  New Genes Causing Hereditary Parkinson's Disease or Parkinsonism.

Authors:  Andreas Puschmann
Journal:  Curr Neurol Neurosci Rep       Date:  2017-09       Impact factor: 5.081

6.  Genetic analysis of the TMEM230 gene in Chinese Han patients with Parkinson's disease.

Authors:  Chang-He Shi; Fang Li; Meng-Meng Shi; Zhi-Hua Yang; Cheng-Yuan Mao; Shu-Yu Zhang; Hui Wang; Yuan Cheng; Jing Yang; Jun Wu; Yu-Ming Xu
Journal:  Sci Rep       Date:  2017-04-26       Impact factor: 4.379

Review 7.  The Role of TMEM230 Gene in Parkinson's Disease.

Authors:  Hao Deng; Kuan Fan; Joseph Jankovic
Journal:  J Parkinsons Dis       Date:  2018       Impact factor: 5.568

8.  Characterization of Parkinson's disease-related pathogenic TMEM230 mutants.

Authors:  Daleum Nam; Hyejung Kim; Dong-Joo Choi; Yun-Hee Bae; Byoung Dae Lee; Ilhong Son; Wongi Seol
Journal:  Anim Cells Syst (Seoul)       Date:  2018-03-22       Impact factor: 1.815

9.  Ten Years of the International Parkinson Disease Genomics Consortium: Progress and Next Steps.

Authors: 
Journal:  J Parkinsons Dis       Date:  2020       Impact factor: 5.568

10.  TMEM230 in Parkinson's disease in a southern Spanish population.

Authors:  Cristina Tejera-Parrado; Silvia Jesús; Adrián López-Ruíz; Dolores Buiza-Rueda; Marta Bonilla-Toribio; Inmaculada Bernal-Bernal; María Teresa Periñán; Laura Vargas-González; Pilar Gómez-Garre; Pablo Mir
Journal:  PLoS One       Date:  2018-05-17       Impact factor: 3.240

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