Literature DB >> 12741821

A model for effector activity in a highly specific biological electron transfer complex: the cytochrome P450(cam)-putidaredoxin couple.

Susan Sondej Pochapsky1, Thomas C Pochapsky, Julie W Wei.   

Abstract

The camphor hydroxylase cytochrome P450(cam) (CYP101) catalyzes the 5-exo hydroxylation of camphor in the first step of camphor catabolism by Pseudomonas putida. CYP101 forms a specific electron transfer complex with its physiological reductant, the Cys(4)Fe(2)S(2) ferredoxin putidaredoxin (Pdx). Pdx, along with other proteins and small molecules, has also been shown to be an effector for turnover by CYP101. Multidimensional nuclear magnetic resonance (NMR) techniques have been used to make extensive sequential (1)H, (15)N, and (13)C resonance assignments in CYP101 that permit a more complete characterization of the complex formed by CYP101 and Pdx. NMR-detected perturbations in CYP101 upon Pdx binding encompass regions of the CYP101 remote from the putative Pdx binding site, including in particular a region of the CYP101 molecule that has been implicated in substrate access to the active site via dynamical processes. A model for effector activity is proposed in which the primary role of the effector is to prevent uncoupling (formation of reduced oxo species without formation of hydroxycamphor) by enforcing conformations of CYP101 that prevent loss of substrate and/or intermediates prior to turnover. A secondary role could also be to enforce conformations that permit efficient proton transfer into the active site for coupled proton/electron transfer.

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Year:  2003        PMID: 12741821     DOI: 10.1021/bi034263s

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  41 in total

Review 1.  Conformational plasticity and structure/function relationships in cytochromes P450.

Authors:  Thomas C Pochapsky; Sophia Kazanis; Marina Dang
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

2.  Molecular characterization of a class I P450 electron transfer system from Novosphingobium aromaticivorans DSM12444.

Authors:  Wen Yang; Stephen G Bell; Hui Wang; Weihong Zhou; Nicola Hoskins; Alison Dale; Mark Bartlam; Luet-Lok Wong; Zihe Rao
Journal:  J Biol Chem       Date:  2010-06-24       Impact factor: 5.157

3.  Spring-loading the active site of cytochrome P450cam.

Authors:  Marina Dang; Susan Sondej Pochapsky; Thomas C Pochapsky
Journal:  Metallomics       Date:  2010-12-24       Impact factor: 4.526

4.  P450cam visits an open conformation in the absence of substrate.

Authors:  Young-Tae Lee; Richard F Wilson; Igor Rupniewski; David B Goodin
Journal:  Biochemistry       Date:  2010-04-27       Impact factor: 3.162

Review 5.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

6.  Identification of productive and futile encounters in an electron transfer protein complex.

Authors:  Witold Andrałojć; Yoshitaka Hiruma; Wei-Min Liu; Enrico Ravera; Masaki Nojiri; Giacomo Parigi; Claudio Luchinat; Marcellus Ubbink
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

7.  Coupled flexibility change in cytochrome P450cam substrate binding determined by neutron scattering, NMR, and molecular dynamics simulation.

Authors:  Yinglong Miao; Zheng Yi; Carey Cantrell; Dennis C Glass; Jerome Baudry; Nitin Jain; Jeremy C Smith
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

8.  Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate.

Authors:  Stefan Stoll; Young-Tae Lee; Mo Zhang; Richard F Wilson; R David Britt; David B Goodin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-23       Impact factor: 11.205

9.  Effect of redox partner binding on CYP101D1 conformational dynamics.

Authors:  Dipanwita Batabyal; Thomas L Poulos
Journal:  J Inorg Biochem       Date:  2018-03-01       Impact factor: 4.155

10.  Ligand-induced conformational heterogeneity of cytochrome P450 CYP119 identified by 2D NMR spectroscopy with the unnatural amino acid (13)C-p-methoxyphenylalanine.

Authors:  Jed N Lampe; Stephen N Floor; John D Gross; Clinton R Nishida; Yongying Jiang; Michael J Trnka; Paul R Ortiz de Montellano
Journal:  J Am Chem Soc       Date:  2008-12-03       Impact factor: 15.419

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