Literature DB >> 27799304

Consequences of Glycine Mutations in the Fibronectin-binding Sequence of Collagen.

Panharith Chhum1, Hongtao Yu1,2, Bo An1, Brian R Doyon1, Yu-Shan Lin3, Barbara Brodsky4.   

Abstract

Collagen and fibronectin (Fn) are two key extracellular matrix proteins, which are known to interact and jointly shape matrix structure and function. Most proteins that interact with collagen bind only to the native triple-helical form, whereas Fn is unusual in binding strongly to denatured collagen and more weakly to native collagen. The consequences of replacing a Gly by Ser at each position in the required (Gly-Xaa-Yaa)6 Fn-binding sequence are probed here, using model peptides and a recombinant bacterial collagen system. Fluorescence polarization and solid-state assays indicated that Gly replacements at four sites within the Fn-binding sequence led to decreased Fn binding to denatured collagen. Molecular dynamics simulations showed these Gly replacements interfered with the interaction of a collagen β-strand with the β-sheet structure of Fn modules seen in the high resolution crystal structure. Whereas previous studies showed that Gly to Ser mutations within an integrin-binding site caused no major structural perturbations, mutations within the Fn-binding site caused the triple helix to become highly sensitive to trypsin digestion. This trypsin susceptibility is consistent with the significant local unfolding and loss of hydrogen bonding seen in molecular dynamics simulations. Protease sensitivity resulting from mutations in the Fn-binding sequence could lead to degradation of type I collagen, early embryonic lethality, and the scarcity of reported osteogenesis imperfecta mutations in this region.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  collagen; extracellular matrix; extracellular matrix protein; fibronectin; molecular dynamics; mutation; osteogenesis imperfecta; peptides; recombinant protein expression

Mesh:

Substances:

Year:  2016        PMID: 27799304      PMCID: PMC5207138          DOI: 10.1074/jbc.M116.753566

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  46 in total

1.  Equilibrium thermal transitions of collagen model peptides.

Authors:  Anton V Persikov; Yujia Xu; Barbara Brodsky
Journal:  Protein Sci       Date:  2004-03-09       Impact factor: 6.725

2.  Computed free energy differences between point mutations in a collagen-like peptide.

Authors:  S D Mooney; C C Huang; P A Kollman; T E Klein
Journal:  Biopolymers       Date:  2001-03       Impact factor: 2.505

3.  Guilty by association: some collagen II mutants alter the formation of ECM as a result of atypical interaction with fibronectin.

Authors:  Hidetoshi Ito; Eileen Rucker; Andrzej Steplewski; Erin McAdams; Raymond J Brittingham; Tatiana Alabyeva; Andrzej Fertala
Journal:  J Mol Biol       Date:  2005-09-16       Impact factor: 5.469

4.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

5.  The human type I collagen mutation database.

Authors:  R Dalgleish
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

6.  Embryonic lethal mutation in mice induced by retrovirus insertion into the alpha 1(I) collagen gene.

Authors:  A Schnieke; K Harbers; R Jaenisch
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7.  Self-association of streptococcus pyogenes collagen-like constructs into higher order structures.

Authors:  Ayumi Yoshizumi; Zhuoxin Yu; Teresita Silva; Geetha Thiagarajan; John A M Ramshaw; Masayori Inouye; Barbara Brodsky
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

Review 8.  Collagen structure and stability.

Authors:  Matthew D Shoulders; Ronald T Raines
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

9.  Mechanism of stabilization of a bacterial collagen triple helix in the absence of hydroxyproline.

Authors:  Angela Mohs; Teresita Silva; Takeshi Yoshida; Ravish Amin; Slawomir Lukomski; Masayori Inouye; Barbara Brodsky
Journal:  J Biol Chem       Date:  2007-08-10       Impact factor: 5.157

10.  Structural basis of sequence-specific collagen recognition by SPARC.

Authors:  Erhard Hohenester; Takako Sasaki; Camilla Giudici; Richard W Farndale; Hans Peter Bächinger
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-14       Impact factor: 11.205

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Authors:  Vinod Dasa; James R B Eastwood; Michal Podgorski; Heewon Park; Christopher Blackstock; Tetyana Antoshchenko; Piotr Rogala; Tadeusz Bieganski; S Michal Jazwinski; Malwina Czarny-Ratajczak
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Review 2.  Collagen misfolding mutations: the contribution of the unfolded protein response to the molecular pathology.

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3.  Collagen Gly missense mutations: Effect of residue identity on collagen structure and integrin binding.

Authors:  Yimin Qiu; Arya Mekkat; Hongtao Yu; Sezin Yigit; Samir Hamaia; Richard W Farndale; David L Kaplan; Yu-Shan Lin; Barbara Brodsky
Journal:  J Struct Biol       Date:  2018-05-11       Impact factor: 2.867

4.  Effects of flexibility of the α2 chain of type I collagen on collagenase cleavage.

Authors:  Arya Mekkat; Erik Poppleton; Bo An; Robert Visse; Hideaki Nagase; David L Kaplan; Barbara Brodsky; Yu-Shan Lin
Journal:  J Struct Biol       Date:  2018-05-12       Impact factor: 2.867

5.  Adverse effects of Alport syndrome-related Gly missense mutations on collagen type IV: Insights from molecular simulations and experiments.

Authors:  Jingjie Yeo; Yimin Qiu; Gang Seob Jung; Yong-Wei Zhang; Markus J Buehler; David L Kaplan
Journal:  Biomaterials       Date:  2020-02-12       Impact factor: 12.479

6.  Molecular underpinnings of integrin binding to collagen-mimetic peptides containing vascular Ehlers-Danlos syndrome-associated substitutions.

Authors:  Cody L Hoop; Allysa P Kemraj; Baifan Wang; Sonal Gahlawat; Madison Godesky; Jie Zhu; Haley R Warren; David A Case; David I Shreiber; Jean Baum
Journal:  J Biol Chem       Date:  2019-08-12       Impact factor: 5.157

7.  ADAMTSL2 gene variant in patients with features of autosomal dominant connective tissue disorders.

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8.  Characterization of amino acid residues of T-cell receptors interacting with HLA-A*02-restricted antigen peptides.

Authors:  Ying Zhu; Changxin Huang; Meng Su; Zuanmin Ge; Lanlan Gao; Yanfei Shi; Xuechun Wang; Jianfeng Chen
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