| Literature DB >> 27798356 |
Thomas Yvert1, Eri Miyamoto-Mikami2,3, Haruka Murakami4, Motohiko Miyachi4, Takashi Kawahara5, Noriyuki Fuku6.
Abstract
The aim of this study was to examine a polygenic profile related to endurance performance, based on current knowledge, in the Japanese population. We analyzed 21 genetic polymorphisms that have been reported to be associated with endurance performance and its related phenotypes in 175 endurance runners (60 international-, 94 national-, and 21 regional-level) and 649 controls in the Japanese population. Then, we calculated the total genotype score (TGS) (maximum value of 100 for the theoretically optimum polygenic score) for endurance performance. There was no association between the TGS and endurance athlete status (Control: 49.0 ± 7.6, Regional: 47.3 ± 7.6, National: 49.1 ± 5.7, and International: 48.2 ± 7.0, P = 0.626). These results suggested that TGSs based on the 21 previously published endurance performance-associated polymorphisms do not influence endurance running performance in the Japanese population. Nevertheless, some marginal tendencies have to be noted: the frequencies of the ACTN3 R577X rs1815739 RR+RX genotype and the GNB3 rs5443 CC+CT genotype were higher in international athletes than in controls (85% vs. 73.6%, P = 0.042 and 90% vs. 76%, P = 0.007, respectively), but not significantly different after Bonferroni correction.Entities:
Keywords: Endurance runner; genotype score; physical performance; polymorphism
Mesh:
Year: 2016 PMID: 27798356 PMCID: PMC5099965 DOI: 10.14814/phy2.13003
Source DB: PubMed Journal: Physiol Rep ISSN: 2051-817X
Studied polymorphisms for endurance performance
| Gene symbol | Gene name | rs number | Polymorphism (Function) | Reference | Genotype score |
|---|---|---|---|---|---|
| Nuclear DNA | |||||
|
| angiotensin I converting enzyme | rs4340 |
| Myerson et al. ( | II = 2, ID = 1, DD = 0 |
|
| actinin, alpha 3 | rs1815739 | C> | Yang et al. ( | TT = 2, CT = 1, CC = 0 |
|
| adrenoceptor alpha 2A | rs553668 | T> | Wolfarth et al. ( | CC = 2, CT = 1, TT = 0 |
|
| adrenoceptor beta 2 | rs1042713 |
| Moore et al. ( | CC = 2, CG = 1, GG = 0 |
| rs1042714 |
| Wolfarth et al. ( | AA = 2, AG = 1, GG = 0 | ||
|
| adrenoceptor beta 3 | rs4994 | T> | Santiago et al. ( | CC = 2, CT = 1, TT = 0 |
|
| apolipoprotein E | rs429358 | T> | Thompson et al. ( | E3E4 (E4E4,E4E2) = 2 |
| rs7412 | C> | E3E2 (E2E2) = 1; E3E3 = 0 | |||
|
| creatine kinase, muscle | rs8111989 |
| Rivera et al. ( | AA = 2, AG = 1, GG = 0 |
|
| collagen, type V, alpha 1 | rs12722 | C> | Posthumus et al. ( | TT = 2, CT = 1, CC = 0 |
|
| GA‐binding protein transcription factor, beta subunit 1 | rs7181866 | A> | Eynon et al. ( | GG = 2, AG = 1, AA = 0 |
|
| guanine nucleotide‐binding protein (G protein), beta polypeptide 3 | rs5443 | C> | Eynon et al. ( | TT = 2, CT = 1, CC = 0 |
|
| kinase insert domain receptor | rs1870377 |
| Ahmetov et al. ( | AA = 2, AT = 1, TT = 0 |
|
| nuclear factor of activated T‐cells, cytoplasmic, calcineurin‐dependent 4 | rs2229309 |
| Ahmetov et al. ( | GG = 2, GC = 1, CC = 0 |
|
| peroxisome proliferator‐activated receptor delta | rs2016520 | C> | Hautala et al. ( | TT = 2, CT = 1, CC = 0 |
|
| peroxisome proliferator‐activated receptor gamma, coactivator 1 alpha | rs8192678 |
| Lucia et al. ( | GG = 2, AG = 1, AA = 0 |
|
| peroxisome proliferator‐activated receptor gamma, coactivator 1 beta | rs7732671 | G> | Ahmetov et al. ( | not included |
|
| solute carrier family 16 (monocarboxylate transporter), member 1 | rs1049434 | T> | Cupeiro et al. ( | AA = 2, AT = 1, TT = 0 |
|
| transcription factor A, mitochondrial | rs1937 | G> | Ahmetov et al. ( | CC = 2, GC = 1, GG = 0 |
|
| uncoupling protein 2 | rs660339 | C> | Ahmetov et al. ( | TT = 2, CT = 1, CC = 0 |
|
| uncoupling protein 3 | rs1800849 | C> | Ahmetov et al. ( | TT = 2, CT = 1, CC = 0 |
| Mitochondrial DNA | |||||
|
| mitochondrially encoded NADH dehydrogenase 2 | m.4833 (Haplogroup G) | A> | Mikami et al. ( | G = 2, A = 0 |
Phenotype‐associated alleles in previous studies (optimal alleles) are underlined. Ala: alanine, Arg: arginine, Asp: aspartic acid, Cys: cysteine, Gln: glutamine, Glu: glutamic acid, Gly: glycine, His: histidine, Pro: proline, Ser: serine, Ter: termination codon, Thr: threonine, Trp: tryptophan, UTR: untranslated region, and Val: valine. 1GS of APOE was assigned by a combination of rs429358 and rs7412 genotypes based on Thompson et al. (2004) (PMID: 14767871): the E4 and E3 alleles, respectively, determined as “optimal” and “less optimal” for endurance phenotypes.
Figure 1Total Genotype Score, based on 21 polymorphisms related with endurance performance, in the four studied groups (P = 0.626). The horizontal bars represent the mean values with standard deviations.
Allele and genotype frequencies of the polymorphisms presenting significant results between international athletes and controls
| Gene symbol | Polymorphism rs number | Allele frequency | Genotype frequency, | International Athletes versus controls | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Allele | Control | Regional athlete | National athlete | International athlete | Genotype | Control | Regional athlete | National athlete | International athlete | |||
|
|
C/ | C | 0.47 | 0.43 | 0.48 | 0.56 | CC | 132 (20.3) | 3 (13.4) | 20 (21.3) | 16 (26.7) |
0.042 (2.03 [0.98–4.21]) |
| T | 0.53 | 0.57 | 0.52 | 0.44 | CT | 346 (53.3) | 12 (57.1) | 50 (53.2) | 35 (58.3) | |||
| TT | 171 (26.4) | 6 (28.6) | 24 (25.5) | 9 (15.0) | ||||||||
|
|
C> | C | 0.51 | 0.38 | 0.56 | 0.59 | CC | 166 (25.6) | 5 (23.8) | 31 (33.3) | 17 (28.3) |
0.0072 (0.35 [0.15–0.83]) |
| T | 0.49 | 0.62 | 0.44 | 0.41 | CT | 327 (50.4) | 6 (28.6) | 42 (45.2) | 37 (61.7) | |||
| TT | 156 (24.0) | 10 (47.6) | 20 (21.5) | 6 (10.0) | ||||||||
A most fitted genetic model based on Akaike information criterion is shown.
Genotype frequencies of 20 polymorphisms in all groups
| Gene symbol | Polymorphism (Function or location) rs number | Genotype | Genotype frequency, | ||||
|---|---|---|---|---|---|---|---|
| Control | All athlete | Regional athlete | National athlete | International athlete | |||
| Nuclear DNA | |||||||
|
|
| II | 269 (41.5) | 72 (41.1) | 7 (33.3) | 39 (41.5) | 26 (43.3) |
| ID | 301 (46.4) | 78 (44.6) | 11 (52.4) | 40 (42.5) | 27 (45.0) | ||
| DD | 79 (12.2) | 25 (14.3) | 3 (14.3) | 15 (16.0) | 7 (11.7) | ||
|
|
C/ | CC | 132 (20.3) | 39 (22.3) | 3 (14.3) | 20 (21.3) | 16 (26.7) |
| CT | 346 (53.3) | 97 (55.4) | 12 (57.1) | 50 (53.2) | 35 (58.3) | ||
| TT | 171 (26.4) | 39 (22.3) | 6 (28.6) | 24 (25.5) | 9 (15.0) | ||
|
|
T> | TT | 112 (17.3) | 34 (19.4) | 5 (23.8) | 16 (17.0) | 13 (21.7) |
| TC | 326 (50.2) | 80 (45.7) | 10 (47.6) | 41 (43.6) | 29 (48.3) | ||
| CC | 211 (32.5) | 61 (34.9) | 6 (28.6) | 37 (39.4) | 18 (30.0) | ||
|
|
| AA | 131 (20.2) | 36 (20.6) | 5 (23.8) | 20 (21.3) | 11 (18.3) |
| AG | 345 (53.2) | 95 (54.3) | 11 (52.4) | 50 (53.2) | 34 (56.7) | ||
| GG | 173 (26.7) | 44 (25.1) | 5 (23.8) | 24 (25.5) | 15 (25.0) | ||
|
| CC | 557 (85.8) | 151 (86.3) | 19 (90.5) | 78 (83.0) | 54 (90.0) | |
| CG | 91 (14.0) | 24 (13.7) | 2 (9.5) | 16 (17.0) | 6 (10.0) | ||
| GG | 1 (0.2) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | ||
|
|
T> | TT | 425 (65.5) | 111 (63.4) | 16 (76.2) | 56 (59.6) | 39 (65.0) |
| TC | 206 (31.7) | 58 (33.1) | 5 (23.8) | 35 (37.2) | 18 (30.0) | ||
| CC | 18 (2.8) | 6 (3.4) | 0 (0.0) | 3 (3.2) | 3 (5.0) | ||
|
|
T> | TT | 511 (78.7) | 137 (78.3) | 18 (85.7) | 70 (74.5) | 49 (81.7) |
| TC | 128 (19.7) | 38 (21.7) | 3 (14.3) | 24 (25.5) | 11 (18.3) | ||
| CC | 10 (1.5) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | ||
|
C> | CC | 597 (92.0) | 161 (92.0) | 17 (81.0) | 89 (94.7) | 55 (91.7) | |
| CT | 51 (7.9) | 14 (8.0) | 4 (19.1) | 5 (5.3) | 5 (8.3) | ||
| TT | 1 (0.2) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | ||
|
|
| AA | 465 (71.7) | 126 (72.0) | 15 (71.4) | 66 (70.2) | 45 (75.0) |
| AG | 166 (25.6) | 49 (28.0) | 6 (28.6) | 28 (29.8) | 15 (25.0) | ||
| GG | 18 (2.8) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | ||
|
|
C> | CC | 428 (66.0) | 132 (75.4) | 18 (85.7) | 73 (77.7) | 41 (68.3) |
| CT | 204 (31.4) | 39 (22.3) | 3 (14.3) | 20 (21.3) | 16 (26.7) | ||
| TT | 17 (2.6) | 4 (2.3) | 0 (0.0) | 1 (1.1) | 3 (5.0) | ||
|
|
A> | AA | 391 (60.2) | 102 (58.3) | 13 (61.9) | 54 (57.5) | 35 (58.3) |
| AG | 226 (34.8) | 60 (34.3) | 7 (33.3) | 33 (35.1) | 20 (33.3) | ||
| GG | 32 (4.9) | 13 (7.4) | 1 (4.8) | 7 (7.5) | 5 (8.3) | ||
|
|
C> | CC | 166 (25.6) | 53 (30.5) | 5 (23.8) | 31 (33.3) | 17 (28.3) |
| CT | 327 (50.4) | 85 (48.9) | 6 (28.6) | 42 (45.2) | 37 (61.7) | ||
| TT | 156 (24.0) | 36 (20.7) | 10 (47.6) | 20 (21.5) | 6 (10.0) | ||
|
|
| AA | 229 (35.3) | 60 (34.3) | 7 (33.3) | 36 (38.3) | 17 (28.3) |
| AT | 303 (46.7) | 83 (47.4) | 12 (57.1) | 35 (37.2) | 36 (60.0) | ||
| TT | 117 (18.0) | 32 (18.3) | 2 (9.5) | 23 (24.5) | 7 (11.7) | ||
|
|
| GG | 447 (68.9) | 120 (68.6) | 10 (47.6) | 65 (69.2) | 45 (75.0) |
| GC | 181 (27.9) | 48 (27.4) | 11 (52.4) | 25 (26.6) | 12 (20.0) | ||
| CC | 21 (3.2) | 7 (4.0) | 0 (0.0) | 4 (4.3) | 3 (5.0) | ||
|
|
C> | CC | 29 (4.5) | 5 (2.9) | 0 (0.0) | 3 (3.2) | 2 (3.3) |
| CT | 203 (31.3) | 58 (33.1) | 7 (33.3) | 33 (35.1) | 18 (30.0) | ||
| TT | 417 (64.2) | 112 (64.0) | 14 (66.7) | 58 (61.7) | 40 (66.7) | ||
|
|
| GG | 191 (29.4) | 45 (25.7) | 6 (28.6) | 27 (28.7) | 12 (20.0) |
| GA | 324 (49.9) | 87 (49.7) | 10 (47.6) | 46 (48.9) | 31 (51.7) | ||
| AA | 134 (20.6) | 43 (24.6) | 5 (23.8) | 21 (22.3) | 17 (28.3) | ||
|
|
T> | TT | 61 (9.4) | 24 (13.7) | 2 (9.5) | 15 (16.0) | 7 (11.7) |
| TA | 300 (46.2) | 75 (42.9) | 10 (47.6) | 41 (43.6) | 24 (40) | ||
| AA | 288 (44.4) | 76 (43.4) | 9 (42.9) | 38 (40.4) | 29 (48.3) | ||
|
|
G> | GG | 420 (64.7) | 115 (65.7) | 15 (71.4) | 56 (59.6) | 44 (73.3) |
| GC | 207 (31.9) | 53 (30.3) | 6 (28.6) | 32 (34.0) | 15 (25.0) | ||
| CC | 22 (3.4) | 7 (4.0) | 0 (0.0) | 6 (6.4) | 1 (1.7) | ||
|
|
C> | CC | 165 (25.4) | 43 (24.6) | 9 (42.9) | 21 (22.3) | 13 (21.7) |
| CT | 346 (53.3) | 82 (46.9) | 7 (33.3) | 46 (48.9) | 29 (48.3) | ||
| TT | 138 (21.3) | 50 (28.6) | 5 (23.8) | 27 (28.7) | 18 (30.0) | ||
|
|
C> | CC | 334 (51.5) | 81 (46.3) | 13 (61.9) | 42 (44.7) | 26 (43.3) |
| CT | 257 (39.6) | 82 (46.9) | 7 (33.3) | 45 (47.9) | 30 (50.0) | ||
| TT | 58 (8.9) | 12 (6.9) | 1 (4.8) | 7 (7.5) | 4 (6.7) | ||
| Mitochondrial DNA | |||||||
|
|
A> | A | 594 (91.5) | 163 (93.1) | 20 (95.2) | 86 (91.5) | 57 (95.0) |
| G | 55 (8.5) | 12 (6.9) | 1 (4.8) | 8 (8.5) | 3 (5.0) | ||
Gene names of the gene symbols are show in Table 1. All athletes comprise regional‐, national‐, and international‐level athletes.