Literature DB >> 27793967

The Three-Dimensional Structures of Amyloids.

Roland Riek1.   

Abstract

Amyloids are highly ordered protein aggregates that are associated with both disease (including PrP prion, Alzheimer's, and Parkinson's) and biological function. The amyloid structure is composed of the cross-β-sheet entity, which is an almost indefinitely repeating two-layered intermolecular β-sheet motif. The three-dimensional (3D) structure is unique among protein folds because it folds only upon intermolecular contacts (for a folding to occur, only short sequences of amino acid residues are required), and the structure repeats itself at the atomic level (i.e., every 4.7 Å). As a consequence of this structure, among others, it can grow by recruiting corresponding amyloid peptide/protein and thus has the capacity to be an infectious protein (i.e., a prion). Furthermore, its repetitiveness can translate what would be a nonspecific activity as monomer into a potent one through cooperativity. Because of these and other properties, the activities of amyloids are manifold and include peptide storage, template assistance, loss of function, gain of function, generation of toxicity, membrane binding, infectivity, and more. This review summarizes the structural nature of the cross-β-sheet motif on the basis of a few high-resolution structural studies of amyloids in the context of potential biological activities.
Copyright © 2017 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2017        PMID: 27793967      PMCID: PMC5287077          DOI: 10.1101/cshperspect.a023572

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  66 in total

1.  Staining methods for identification of amyloid in tissue.

Authors:  G T Westermark; K H Johnson; P Westermark
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

2.  Designing conditions for in vitro formation of amyloid protofilaments and fibrils.

Authors:  F Chiti; P Webster; N Taddei; A Clark; M Stefani; G Ramponi; C M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

Review 3.  Review: history of the amyloid fibril.

Authors:  J D Sipe; A S Cohen
Journal:  J Struct Biol       Date:  2000-06       Impact factor: 2.867

4.  Amyloid aggregates of the HET-s prion protein are infectious.

Authors:  Marie-Lise Maddelein; Suzana Dos Reis; Stéphane Duvezin-Caubet; Bénédicte Coulary-Salin; Sven J Saupe
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

5.  Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis.

Authors:  Rakez Kayed; Elizabeth Head; Jennifer L Thompson; Theresa M McIntire; Saskia C Milton; Carl W Cotman; Charles G Glabe
Journal:  Science       Date:  2003-04-18       Impact factor: 47.728

6.  A yeast prion provides a mechanism for genetic variation and phenotypic diversity.

Authors:  H L True; S L Lindquist
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

7.  Charge attraction and beta propensity are necessary for amyloid fibril formation from tetrapeptides.

Authors:  Lars Tjernberg; Waltteri Hosia; Niklas Bark; Johan Thyberg; Jan Johansson
Journal:  J Biol Chem       Date:  2002-09-04       Impact factor: 5.157

8.  Evidence for seeding of beta -amyloid by intracerebral infusion of Alzheimer brain extracts in beta -amyloid precursor protein-transgenic mice.

Authors:  M D Kane; W J Lipinski; M J Callahan; F Bian; R A Durham; R D Schwarz; A E Roher; L C Walker
Journal:  J Neurosci       Date:  2000-05-15       Impact factor: 6.167

Review 9.  The utility of prions.

Authors:  Lev Z Osherovich; Jonathan S Weissman
Journal:  Dev Cell       Date:  2002-02       Impact factor: 12.270

Review 10.  The amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeutics.

Authors:  John Hardy; Dennis J Selkoe
Journal:  Science       Date:  2002-07-19       Impact factor: 47.728

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  11 in total

Review 1.  Advances in protein misfolding, amyloidosis and its correlation with human diseases.

Authors:  Debanjan Kundu; Kumari Prerna; Rahul Chaurasia; Manoj Kumar Bharty; Vikash Kumar Dubey
Journal:  3 Biotech       Date:  2020-04-04       Impact factor: 2.406

Review 2.  High-resolution probing of early events in amyloid-β aggregation related to Alzheimer's disease.

Authors:  Bikash R Sahoo; Sarah J Cox; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2020-04-17       Impact factor: 6.222

3.  BIAPSS: A Comprehensive Physicochemical Analyzer of Proteins Undergoing Liquid-Liquid Phase Separation.

Authors:  Aleksandra E Badaczewska-Dawid; Vladimir N Uversky; Davit A Potoyan
Journal:  Int J Mol Sci       Date:  2022-05-31       Impact factor: 6.208

Review 4.  Protein Aggregation Landscape in Neurodegenerative Diseases: Clinical Relevance and Future Applications.

Authors:  Niccolò Candelise; Silvia Scaricamazza; Illari Salvatori; Alberto Ferri; Cristiana Valle; Valeria Manganelli; Tina Garofalo; Maurizio Sorice; Roberta Misasi
Journal:  Int J Mol Sci       Date:  2021-06-02       Impact factor: 5.923

Review 5.  Comparing the Folds of Prions and Other Pathogenic Amyloids.

Authors:  José Miguel Flores-Fernández; Vineet Rathod; Holger Wille
Journal:  Pathogens       Date:  2018-05-04

6.  Two new polymorphic structures of human full-length alpha-synuclein fibrils solved by cryo-electron microscopy.

Authors:  Ricardo Guerrero-Ferreira; Nicholas Mi Taylor; Ana-Andreea Arteni; Pratibha Kumari; Daniel Mona; Philippe Ringler; Markus Britschgi; Matthias E Lauer; Ali Makky; Joeri Verasdonck; Roland Riek; Ronald Melki; Beat H Meier; Anja Böckmann; Luc Bousset; Henning Stahlberg
Journal:  Elife       Date:  2019-12-09       Impact factor: 8.140

7.  The role of disorder in RNA binding affinity and specificity.

Authors:  Diana S M Ottoz; Luke E Berchowitz
Journal:  Open Biol       Date:  2020-12-23       Impact factor: 6.411

Review 8.  β-Barrels and Amyloids: Structural Transitions, Biological Functions, and Pathogenesis.

Authors:  Anna I Sulatskaya; Anastasiia O Kosolapova; Alexander G Bobylev; Mikhail V Belousov; Kirill S Antonets; Maksim I Sulatsky; Irina M Kuznetsova; Konstantin K Turoverov; Olesya V Stepanenko; Anton A Nizhnikov
Journal:  Int J Mol Sci       Date:  2021-10-20       Impact factor: 5.923

Review 9.  The Role of Functional Amyloids in Bacterial Virulence.

Authors:  Nani Van Gerven; Sander E Van der Verren; Dirk M Reiter; Han Remaut
Journal:  J Mol Biol       Date:  2018-07-12       Impact factor: 5.469

10.  Cryo-EM structure of alpha-synuclein fibrils.

Authors:  Ricardo Guerrero-Ferreira; Nicholas Mi Taylor; Daniel Mona; Philippe Ringler; Matthias E Lauer; Roland Riek; Markus Britschgi; Henning Stahlberg
Journal:  Elife       Date:  2018-07-03       Impact factor: 8.140

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