| Literature DB >> 27789940 |
Mingmei Xiong1, Jian Wang1, Meihua Guo1, Qipeng Zhou1, Wenju Lu1.
Abstract
TRPM8 plays a key role in COPD. The development of pulmonary hypertension (PH) in COPD adversely affects survival and exercise capacity. Thus, the aim of this study was to evaluate the possible association between single nucleotide polymorphisms (SNPs) in TRPM8 and COPD or PH in COPD among the Chinese Han population. A total of 513 COPD patients and 506 controls were enrolled in the study. Six tag SNPs (tSNPs) were genotyped. The relationship between COPD or PH in COPD and the six tSNPs was evaluated using the χ2 test and genetic model analysis. In the rs9789398 polymorphism, the T/C genotype was associated with an increased risk for COPD (P=0.005). Under the assumption of models of inheritance, there was an association between the rs9789398 polymorphism and COPD. In the rs9789675 polymorphism, the G/A genotype was associated with an increased risk for COPD (P=0.021). Furthermore, by the χ2 test, we found that the minor allele "A" of rs9789675 (odds ratio [OR] =0.63, 95% confidence interval [CI], 0.42-0.97, P=0.034) and the minor allele "C" of rs9789398 (OR =1.59, 95% CI, 1.03-2.44, P=0.034) were associated with a decreased risk of PH in COPD in allele models. In genetic models, the genotypes "GA" and "AA" of rs9789675 were associated with a decreased risk of PH in COPD. The genotypes "TC" and "CC" of rs9789398 were associated with a decreased risk of PH in COPD. Moreover, "CG" of rs1004478 was significantly associated with a decreased risk of PH in COPD. There was a significant association between the five SNPs (rs2362290, rs9789675, rs9789398, rs1003540, and rs104478) in the TRPM8 gene and the risk of PH in COPD. Our findings indicated that rs9789398 in the TRPM8 gene was significantly associated with the risk of COPD in the Chinese Han population. Moreover, rs9789675, rs9789398, and rs1004478 were significantly associated with the risk of PH in COPD. This study provides a novel insight into COPD and PH in the development of COPD.Entities:
Keywords: COPD; case–control study; pulmonary hypertension; single nucleotide polymorphism
Mesh:
Substances:
Year: 2016 PMID: 27789940 PMCID: PMC5072571 DOI: 10.2147/COPD.S109026
Source DB: PubMed Journal: Int J Chron Obstruct Pulmon Dis ISSN: 1176-9106
Characteristics and grouping of the study population
| Characteristics | Cases | Controls | COPD with PH | COPD without PH | ||
|---|---|---|---|---|---|---|
| n | 513 | 506 | 150 | 363 | ||
| Age, years (mean±SD) | 68.02±11.21 | 56.49±9.43 | <0.001 | 70.03±12.37 | 67.19±10.60 | 0.190 |
| Male, n% | 432 (84.21) | 414 (81.82) | 0.318 | 126 (84.00) | 306 (84.30) | 1.000 |
| Pack-years | 43.08±21.71 | 39.45±19.58 | <0.001 | 41.93±21.65 | 40.47±23.51 | 0.467 |
| BMI, kg/m2 | 23.75±2.57 | 24.18±2.48 | 0.575 | 24.16±2.27 | 23.57±2.69 | 0.051 |
| FEV1 %, predicted | 36.77±16.94 | 95.77±12.98 | <0.001 | 35.67±16.10 | 37.23±18.64 | 0.138 |
| FEV1/FVC | 0.43±0.19 | 0.81±0.96 | <0.001 | 0.43±0.15 | 0.45±0.26 | 0.004 |
| GOLD classification | Level 3 | Level 3 | Level 3 | |||
| PASP, mmHg | 49.64±14.25 | 25.37±5.73 | <0.001 |
Note: P<0.05 indicates statistical significance.
Abbreviations: BMI, body mass index; GOLD, Global initiative for chronic Obstructive Lung Disease; FEV1, forced expiratory volume in 1 second; FVC, forced vital capacity; PASP, pulmonary artery systolic pressure; PH, pulmonary hypertension.
Basic characteristics of SNPs in the enrolled population
| SNPs | Chromosomes | Position | Gene | Allele | Risk of COPD
| Risk of COPD with PH
| ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HWE-P | OR | 95% CI | Allele, | HWE-P | OR | 95% CI | Allele, | |||||
| rs2362290 | 2q37.1 | 233916724 | AG | 0.061 | 1.03 | 0.85–1.24 | 0.781 | 0.291 | 0.8 | 0.60–1.07 | 0.130 | |
| rs9789675 | 2q37.1 | 233916914 | AG | 0.494 | 1.17 | 0.91–1.51 | 0.241 | 0.453 | 0.63 | 0.42–0.97 | 0.034 | |
| rs9789398 | 2q37.1 | 233916979 | CT | 0.922 | 1.33 | 1.01–1.74 | 0.040 | 0.609 | 1.59 | 1.03–2.44 | 0.034 | |
| rs1003540 | 2q37.1 | 233917239 | AG | 0.065 | 0.99 | 0.82–1.19 | 0.912 | 0.394 | 1.28 | 0.96–1.70 | 0.394 | |
| rs1004478 | 2q37.1 | 233917250 | CG | 0.06 | 0.96 | 0.80–1.16 | 0.683 | 0.182 | 1.21 | 0.91–1.62 | 0.194 | |
Note:
P<0.05 indicates statistical significance.
Abbreviations: CI, confidence interval; HWE-P, P-value of Hardy–Weinberg equilibrium; OR, odds ratio; PH, pulmonary hypertension; SNP, single nucleotide polymorphism; TRPM8, transient receptor potential cation channel subfamily M member 8.
Association between rs9789398 genotypes and the risk of COPD
| Model | Genotype | Control | Case | Without adjustment
| With adjustment
| ||
|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | ||||||
| Codominant | TT | 377 (79.2%) | 351 (73%) | 1.00 | 0.069 | 1.00 | 0.2 |
| TC | 93 (19.5%) | 124 (25.8%) | 1.43 (1.05–1.94) | 1.37 (0.96–1.95) | |||
| CC | 6 (1.3%) | 6 (1.2%) | 1.07 (0.34–3.36) | 1.29 (0.37–4.56) | |||
| Dominant | TT | 377 (79.2%) | 351 (73%) | 1.00 | 0.024 | 1.00 | 0.074 |
| TC–CC | 99 (20.8%) | 130 (27%) | 1.41 (1.05–1.90) | 1.37 (0.97–1.93) | |||
| Recessive | TT–TC | 470 (98.7%) | 475 (98.8%) | 1.00 | 0.99 | 1.00 | 0.77 |
| CC | 6 (1.3%) | 6 (1.2%) | 0.99 (0.32–3.09) | 1.20 (0.34–4.25) | |||
| Overdominant | TT–CC | 383 (80.5%) | 357 (74.2%) | 1.00 | 0.021 | 1.00 | 0.082 |
| TC | 93 (19.5%) | 124 (25.8%) | 1.43 (1.05–1.94) | 1.37 (0.96–1.94) | |||
| Log additive | 1.34 (1.02–1.77) | 0.037 | 1.32 (0.96–1.80) | 0.088 | |||
Notes:
P<0.05 indicates statistical significance.
P-values were calculated by two-sided χ2 tests or Fisher’s exact tests for each genotype distribution.
P-values were calculated by unconditional logistic regression adjusted for age, sex, and smoking status.
Abbreviations: CI, confidence interval; OR, odds ratio.
Association between TRPM8 and COPD by smoking status: stratified analysis
| Reference SNP ID | Genotypes | Nonsmokers (n =247)
| Former smokers (n =454)
| Current smokers (n =318)
| ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| COPD; | Control; | COPD; | Control; | COPD; | Control; | |||||
| rs2362290 | GG | 11 (8.9) | 9 (7.9) | 0.713 | 16 (7.6) | 24 (10.1) | 0.399 | 14 (8.1) | 9 (6) | 0.589 |
| GA | 61 (49.6) | 55 (48.2) | 0.759 | 106 (50.2) | 114 (48.1) | 0.865 | 69 (39.9) | 67 (44.7) | 0.474 | |
| AA | 51 (41.5) | 50 (43.9) | 89 (42.2) | 99 (41.8) | 90 (52) | 74 (49.3) | ||||
| rs9789675 | AA | 2 (1.6) | 1 (0.9) | 0.610 | 2 (1) | 3 (1.3) | 0.702 | 4 (2.4) | 2 (1.4) | 0.412 |
| GA | 40 (32.5) | 29 (27.4) | 0.376 | 42 (20.3) | 57 (24.6) | 0.276 | 45 (26.8) | 24 (16.2) | 0.021 | |
| GG | 81 (65.8) | 76 (71.4) | 163 (78.7) | 172 (74.1) | 119 (70.8) | 122 (82.4) | ||||
| rs9789398 | CC | 1 (0.8) | 1 (1) | 0.975 | 1 (0.5) | 3 (1.3) | 0.747 | 4 (2.5) | 2 (1.4) | 0.375 |
| TC | 40 (32.8) | 25 (23.8) | 0.138 | 41 (20.7) | 48 (21.3) | 0.840 | 43 (26.7) | 20 (13.7) | 0.005 | |
| TT | 81 (66.4) | 79 (75.2) | 156 (78.8) | 174 (77.3) | 114 (70.8) | 124 (84.9) | ||||
| rs1003540 | AA | 11 (9) | 8 (7.3) | 0.479 | 16 (7.6) | 23 (9.9) | 0.455 | 14 (8.2) | 9 (6) | 0.627 |
| AG | 62 (50.8) | 51 (46.4) | 0.393 | 105 (50) | 111 (47.8) | 0.838 | 65 (38.2) | 68 (45.3) | 0.257 | |
| GG | 49 (40.2) | 51 (46.4) | 89 (42.2) | 98 (42.2) | 91 (53.5) | 73 (48.7) | ||||
| rs1004478 | GG | 8 (6.6) | 13 (11.4) | 0.319 | 23 (10.9) | 17 (7.1) | 0.151 | 28 (16.5) | 18 (12) | 0.388 |
| CG | 60 (49.2) | 60 (52.6) | 0.124 | 97 (46.2) | 112 (46.9) | 0.775 | 73 (42.9) | 72 (48) | 0.603 | |
| CC | 54 (44.3) | 41 (36) | 90 (42.9) | 110 (46) | 69 (40.6) | 60 (40) | ||||
Notes:
P-values were calculated by logistic regression adjusted for age and sex in nonsmokers.
P-values were calculated by logistic regression adjusted for age, sex, and pack-years in former and current smokers.
P<0.05.
Abbreviations: SNP, single nucleotide polymorphism; TRPM8, transient receptor potential cation channel subfamily M member 8.
Association between genotypes (rs9789675, rs9789398, and rs1004478) and the risk of PH in COPD
| SNP | Model | Genotype | Control | Case | Without adjustment
| With adjustment
| ||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | |||||||
| rs9789675 | Codominant | GG | 248 (70.2%) | 115 (79.3%) | 1.00 | 0.084 | 1.00 | 0.110 |
| GA | 98 (27.8%) | 29 (20%) | 0.64 (0.40–1.02) | 0.64 (0.40–1.04) | ||||
| AA | 7 (2%) | 1 (0.7%) | 0.31 (0.04–2.53) | 0.35 (0.04–2.90) | ||||
| Dominant | GG | 248 (70.2%) | 115 (79.3%) | 1.00 | 0.036 | 1.00 | 0.045 | |
| GA–AA | 105 (29.8%) | 30 (20.7%) | 0.62 (0.39–0.98) | 0.6 (0.39–1.00) | ||||
| Recessive | GG–GA | 346 (98%) | 144 (99.3%) | 1.00 | 0.260 | 1.00 | 0.330 | |
| AA | 7 (2%) | 1 (0.7%) | 0.34 (0.04–2.82) | 0.39 (0.05–3.21) | ||||
| Overdominant | GG–AA | 255 (72.2%) | 116 (80%) | 1.00 | 0.066 | 1.00 | 0.076 | |
| GA | 98 (27.8%) | 29 (20%) | 0.65 (0.41–1.04) | 0.66 (0.41–1.05) | ||||
| Log additive | – | – | – | 0.62 (0.40–0.96) | 0.027 | 0.64 (0.41–0.99) | 0.037 | |
| rs9789398 | Codominant | TT | 237 (70.1%) | 114 (79.7%) | 1.00 | 0.082 | 1.00 | 0.100 |
| TC | 96 (28.4%) | 28 (19.6%) | 0.61 (0.38–0.98) | 0.61 (0.38–0.99) | ||||
| CC | 5 (1.5%) | 1 (0.7%) | 0.42 (0.05–3.60) | 0.47 (0.05–4.17) | ||||
| Dominant | TT | 237 (70.1%) | 114 (79.7%) | 1.00 | 0.027 | 1.00 | 0.034 | |
| TC–CC | 101 (29.9%) | 1 (1.7%) | 0.60 (0.37–0.95) | 0.60 (0.38–0.97) | ||||
| Recessive | TT–TC | 333 (98.5%) | 115 (80.4%) | 1.00 | 0.46 | 1.00 | 0.540 | |
| CC | 5 (1.5%) | 28 (19.6%) | 0.47 (0.05–4.05) | 0.53 (0.06–4.65) | ||||
| Overdominant | TT–CC | 242 (71.6%) | 1.00 | 0.04 | 1.00 | 0.045 | ||
| TC | 96 (28.4%) | 0.61 (0.38–0.99) | 0.62 (0.38–1.00) | |||||
| Log additive | – | – | – | 0.61 (0.39–0.95) | 0.026 | 0.62 (0.40–0.98) | 0.034 | |
| rs1004478 | Codominant | CC | 140 (39.4%) | 73 (49.7%) | 1.00 | 0.048 | 1.00 | 0.055 |
| CG | 175 (49.3%) | 55 (37.4%) | 0.60 (0.40–0.91) | 0.60 (0.40–0.92) | ||||
| GG | 40 (11.3%) | 19 (12.9%) | 0.91 (0.49–1.69) | 0.88 (0.47–1.64) | ||||
| Dominant | CC | 140 (39.4%) | 73 (49.7%) | 1.00 | 0.036 | 1.00 | 0.036 | |
| CG–GG | 215 (60.6%) | 74 (50.3%) | 0.66 (0.45–0.97) | 0.66 (0.44–0.92) | ||||
| Recessive | CC–CG | 312 (88.7%) | 128 (87.1%) | 1.00 | 0.600 | 1.00 | 0.690 | |
| GG | 40 (11.3%) | 19 (12.9%) | 1.17 (0.65–2.10) | 1.13 (0.62–2.03) | ||||
| Overdominant | CC–GG | 180 (50.7%) | 92 (62.6%) | 1.00 | 0.015 | 1.00 | 0.018 | |
| CG | 175 (49.3%) | 55 (37.4%) | 0.61 (0.41–0.91) | 0.62 (0.42–0.93) | ||||
| Log additive | – | – | – | 0.82 (0.61–1.10) | 0.190 | 0.82 (0.61–1.10) | 0.170 | |
Notes:
P<0.05 indicates statistical significance.
P-values were calculated by two-sided χ2 tests or Fisher’s exact tests for each genotype distribution.
P-values were calculated by unconditional logistic regression adjusted for age, sex, and smoking status.
Abbreviations: CI, confidence interval; OR, odds ratio; PH, pulmonary hypertension; SNP, single nucleotide polymorphism.
Figure 1LD plots containing four SNPs from the TRPM8.
Notes: LD analysis of TRPM8 in the Chinese Han controls. LD is indicated using standard color schemes with red signifying very strong LD (LOD ≥2, D′=1) and pink signifying relatively weak LD (LOD ≥2, D′=1).
Abbreviations: LD, linkage disequilibrium; LOD, likelihood of odds; SNP, single nucleotide polymorphism; TRPM8, transient receptor potential cation channel subfamily M member 8.
Haplotype association with response (n=508, adjusted for smoking status + sex + age)
| rs2362290 | rs9789675 | rs9789398 | rs1003540 | rs1004478 | Frequency | OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|
| 1 | A | G | T | G | G | 0.3463 | 1.00 | – |
| 2 | G | G | T | A | C | 0.3057 | 1.30 (0.92–1.84) | 0.14 |
| 3 | A | G | T | G | C | 0.201 | 1.44 (0.98–2.12) | 0.043 |
| 4 | A | A | C | G | C | 0.1298 | 0.71 (0.43–1.16) | 0.17 |
| Rare | 0.0173 | 1.40 (0.46–4.25) | 0.56 |
Note: Global haplotype association: P-value, 0.051.
P<0.05.
Abbreviations: CI, confidence interval; OR, odds ratio.