Literature DB >> 27774488

Designing Reliable Cohorts of Cardiac Patients across MIMIC and eICU.

Catherine Chronaki1, Abdullah Shahin2, Roger Mark2.   

Abstract

The design of the patient cohort is an essential and fundamental part of any clinical patient study. Knowledge of the Electronic Health Records, underlying Database Management System, and the relevant clinical workflows are central to an effective cohort design. However, with technical, semantic, and organizational interoperability limitations, the database queries associated with a patient cohort may need to be reconfigured in every participating site. i2b2 and SHRINE advance the notion of patient cohorts as first class objects to be shared, aggregated, and recruited for research purposes across clinical sites. This paper reports on initial efforts to assess the integration of Medical Information Mart for Intensive Care (MIMIC) and Philips eICU, two large-scale anonymized intensive care unit (ICU) databases, using standard terminologies, i.e. LOINC, ICD9-CM and SNOMED-CT. Focus of this work is lab and microbiology observations and key demographics for patients with a primary cardiovascular ICD9-CM diagnosis. Results and discussion reflecting on reference core terminology standards, offer insights on efforts to combine detailed intensive care data from multiple ICUs worldwide.

Entities:  

Year:  2016        PMID: 27774488      PMCID: PMC5072526          DOI: 10.1109/CIC.2015.7408618

Source DB:  PubMed          Journal:  Comput Cardiol (2010)        ISSN: 2325-887X


  5 in total

1.  Current state of information technologies for the clinical research enterprise across academic medical centers.

Authors:  Shawn N Murphy; Anil Dubey; Peter J Embi; Paul A Harris; Brent G Richter; Fran Turisco; Griffin M Weber; James E Tcheng; Diane Keogh
Journal:  Clin Transl Sci       Date:  2012-02-23       Impact factor: 4.689

2.  Multiparameter Intelligent Monitoring in Intensive Care II: a public-access intensive care unit database.

Authors:  Mohammed Saeed; Mauricio Villarroel; Andrew T Reisner; Gari Clifford; Li-Wei Lehman; George Moody; Thomas Heldt; Tin H Kyaw; Benjamin Moody; Roger G Mark
Journal:  Crit Care Med       Date:  2011-05       Impact factor: 7.598

3.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

4.  Accessing the public MIMIC-II intensive care relational database for clinical research.

Authors:  Daniel J Scott; Joon Lee; Ikaro Silva; Shinhyuk Park; George B Moody; Leo A Celi; Roger G Mark
Journal:  BMC Med Inform Decis Mak       Date:  2013-01-10       Impact factor: 2.796

5.  SHRINE: enabling nationally scalable multi-site disease studies.

Authors:  Andrew J McMurry; Shawn N Murphy; Douglas MacFadden; Griffin Weber; William W Simons; John Orechia; Jonathan Bickel; Nich Wattanasin; Clint Gilbert; Philip Trevvett; Susanne Churchill; Isaac S Kohane
Journal:  PLoS One       Date:  2013-03-07       Impact factor: 3.240

  5 in total
  1 in total

1.  Transformation and Evaluation of the MIMIC Database in the OMOP Common Data Model: Development and Usability Study.

Authors:  Nicolas Paris; Adrien Parrot; Antoine Lamer
Journal:  JMIR Med Inform       Date:  2021-12-14
  1 in total

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