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Literature DB >> 27734873

The dark side of the human genome.

Kelly Rae Chi.

Abstract

Entities: Species

Mesh：

Substances：
Estrogen Receptor alpha

Year: 2016 PMID： 27734873 DOI： 10.1038/538275a

Source DB: PubMed Journal: Nature ISSN： 0028-0836 Impact factor: 49.962

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11 in total

1. Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9.

Authors: Gozde Korkmaz; Rui Lopes; Alejandro P Ugalde; Ekaterina Nevedomskaya; Ruiqi Han; Ksenia Myacheva; Wilbert Zwart; Ran Elkon; Reuven Agami
Journal: Nat Biotechnol Date: 2016-01-11 Impact factor: 54.908

2. High-resolution interrogation of functional elements in the noncoding genome.

Authors: Neville E Sanjana; Jason Wright; Kaijie Zheng; Ophir Shalem; Pierre Fontanillas; Julia Joung; Christine Cheng; Aviv Regev; Feng Zhang
Journal: Science Date: 2016-09-30 Impact factor: 47.728

3. The NIH Roadmap Epigenomics Mapping Consortium.

Authors: Bradley E Bernstein; John A Stamatoyannopoulos; Joseph F Costello; Bing Ren; Aleksandar Milosavljevic; Alexander Meissner; Manolis Kellis; Marco A Marra; Arthur L Beaudet; Joseph R Ecker; Peggy J Farnham; Martin Hirst; Eric S Lander; Tarjei S Mikkelsen; James A Thomson
Journal: Nat Biotechnol Date: 2010-10 Impact factor: 54.908

4. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

Authors: Jason D Buenrostro; Paul G Giresi; Lisa C Zaba; Howard Y Chang; William J Greenleaf
Journal: Nat Methods Date: 2013-10-06 Impact factor: 28.547

5. A method to predict the impact of regulatory variants from DNA sequence.

Authors: Dongwon Lee; David U Gorkin; Maggie Baker; Benjamin J Strober; Alessandro L Asoni; Andrew S McCallion; Michael A Beer
Journal: Nat Genet Date: 2015-06-15 Impact factor: 38.330

6. Cell-of-origin chromatin organization shapes the mutational landscape of cancer.

Authors: Paz Polak; Rosa Karlić; Amnon Koren; Robert Thurman; Richard Sandstrom; Michael Lawrence; Alex Reynolds; Eric Rynes; Kristian Vlahoviček; John A Stamatoyannopoulos; Shamil R Sunyaev
Journal: Nature Date: 2015-02-19 Impact factor: 49.962

7. An integrated encyclopedia of DNA elements in the human genome.

Authors:
Journal: Nature Date: 2012-09-06 Impact factor: 49.962

8. DNMT1-interacting RNAs block gene-specific DNA methylation.

Authors: Annalisa Di Ruscio; Alexander K Ebralidze; Touati Benoukraf; Giovanni Amabile; Loyal A Goff; Jolyon Terragni; Maria Eugenia Figueroa; Lorena Lobo De Figueiredo Pontes; Meritxell Alberich-Jorda; Pu Zhang; Mengchu Wu; Francesco D'Alò; Ari Melnick; Giuseppe Leone; Konstantin K Ebralidze; Sriharsa Pradhan; John L Rinn; Daniel G Tenen
Journal: Nature Date: 2013-10-09 Impact factor: 49.962

9. Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.

Authors: Iakes Ezkurdia; David Juan; Jose Manuel Rodriguez; Adam Frankish; Mark Diekhans; Jennifer Harrow; Jesus Vazquez; Alfonso Valencia; Michael L Tress
Journal: Hum Mol Genet Date: 2014-06-16 Impact factor: 6.150

10. Extra-coding RNAs regulate neuronal DNA methylation dynamics.

Authors: Katherine E Savell; Nancy V N Gallus; Rhiana C Simon; Jordan A Brown; Jasmin S Revanna; Mary Katherine Osborn; Esther Y Song; John J O'Malley; Christian T Stackhouse; Allison Norvil; Humaira Gowher; J David Sweatt; Jeremy J Day
Journal: Nat Commun Date: 2016-07-07 Impact factor: 14.919

14 in total

The dark side of the human genome.

1. Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9.

2. High-resolution interrogation of functional elements in the noncoding genome.

3. The NIH Roadmap Epigenomics Mapping Consortium.

4. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

5. A method to predict the impact of regulatory variants from DNA sequence.

6. Cell-of-origin chromatin organization shapes the mutational landscape of cancer.

7. An integrated encyclopedia of DNA elements in the human genome.

8. DNMT1-interacting RNAs block gene-specific DNA methylation.

9. Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes.

10. Extra-coding RNAs regulate neuronal DNA methylation dynamics.

Review 1. Managing the genomic revolution in cancer diagnostics.

2. Correction.

Review 3. Principles and methods of in-silico prioritization of non-coding regulatory variants.

Review 4. Functional interrogation of non-coding DNA through CRISPR genome editing.

5. How Blue is the Sky?

6. Functional Variants Identified Efficiently through an Integrated Transcriptome and Epigenome Analysis.

7. Noncoding RNAs in Health and Disease.

Review 8. Dark Matter of Primate Genomes: Satellite DNA Repeats and Their Evolutionary Dynamics.

9. Inflammatory Bowel Disease: Complexity and Variability Need Integration.

Review 10. Intron Retention as a Mode for RNA-Seq Data Analysis.