Literature DB >> 28639053

Managing the genomic revolution in cancer diagnostics.

Doreen Nguyen1, Christopher D Gocke2,3,4.   

Abstract

Molecular tumor profiling is now a routine part of patient care, revealing targetable genomic alterations and molecularly distinct tumor subtypes with therapeutic and prognostic implications. The widespread adoption of next-generation sequencing technologies has greatly facilitated clinical implementation of genomic data and opened the door for high-throughput multigene-targeted sequencing. Herein, we discuss the variability of cancer genetic profiling currently offered by clinical laboratories, the challenges of applying rapidly evolving medical knowledge to individual patients, and the need for more standardized population-based molecular profiling.

Entities:  

Keywords:  Cancer panels; Mutations; NGS; Next generation sequencing

Mesh:

Year:  2017        PMID: 28639053     DOI: 10.1007/s00428-017-2175-2

Source DB:  PubMed          Journal:  Virchows Arch        ISSN: 0945-6317            Impact factor:   4.064


  31 in total

1.  A vision for the future of genomics research.

Authors:  Francis S Collins; Eric D Green; Alan E Guttmacher; Mark S Guyer
Journal:  Nature       Date:  2003-04-14       Impact factor: 49.962

2.  Uncovering the role of genomic "dark matter" in human disease.

Authors:  Lance Martin; Howard Y Chang
Journal:  J Clin Invest       Date:  2012-05-01       Impact factor: 14.808

3.  Non-Small Cell Lung Cancer, Version 5.2017, NCCN Clinical Practice Guidelines in Oncology.

Authors:  David S Ettinger; Douglas E Wood; Dara L Aisner; Wallace Akerley; Jessica Bauman; Lucian R Chirieac; Thomas A D'Amico; Malcolm M DeCamp; Thomas J Dilling; Michael Dobelbower; Robert C Doebele; Ramaswamy Govindan; Matthew A Gubens; Mark Hennon; Leora Horn; Ritsuko Komaki; Rudy P Lackner; Michael Lanuti; Ticiana A Leal; Leah J Leisch; Rogerio Lilenbaum; Jules Lin; Billy W Loo; Renato Martins; Gregory A Otterson; Karen Reckamp; Gregory J Riely; Steven E Schild; Theresa A Shapiro; James Stevenson; Scott J Swanson; Kurt Tauer; Stephen C Yang; Kristina Gregory; Miranda Hughes
Journal:  J Natl Compr Canc Netw       Date:  2017-04       Impact factor: 11.908

Review 4.  Cancer whole-genome sequencing: present and future.

Authors:  H Nakagawa; C P Wardell; M Furuta; H Taniguchi; A Fujimoto
Journal:  Oncogene       Date:  2015-03-30       Impact factor: 9.867

5.  NCCN Task Force report: Evaluating the clinical utility of tumor markers in oncology.

Authors:  Phillip G Febbo; Marc Ladanyi; Kenneth D Aldape; Angelo M De Marzo; M Elizabeth Hammond; Daniel F Hayes; A John Iafrate; R Kate Kelley; Guido Marcucci; Shuji Ogino; William Pao; Dennis C Sgroi; Marian L Birkeland
Journal:  J Natl Compr Canc Netw       Date:  2011-11       Impact factor: 11.908

6.  A Targeted High-Throughput Next-Generation Sequencing Panel for Clinical Screening of Mutations, Gene Amplifications, and Fusions in Solid Tumors.

Authors:  Rajyalakshmi Luthra; Keyur P Patel; Mark J Routbort; Russell R Broaddus; Jonathan Yau; Crystal Simien; Wei Chen; David Z Hatfield; L Jeffrey Medeiros; Rajesh R Singh
Journal:  J Mol Diagn       Date:  2016-12-23       Impact factor: 5.568

Review 7.  Pathologists and liquid biopsies: to be or not to be?

Authors:  Paul Hofman; Helmut H Popper
Journal:  Virchows Arch       Date:  2016-08-23       Impact factor: 4.064

8.  Germline Variants in Targeted Tumor Sequencing Using Matched Normal DNA.

Authors:  Kasmintan A Schrader; Donavan T Cheng; Vijai Joseph; Meera Prasad; Michael Walsh; Ahmet Zehir; Ai Ni; Tinu Thomas; Ryma Benayed; Asad Ashraf; Annie Lincoln; Maria Arcila; Zsofia Stadler; David Solit; David M Hyman; David Hyman; Liying Zhang; David Klimstra; Marc Ladanyi; Kenneth Offit; Michael Berger; Mark Robson
Journal:  JAMA Oncol       Date:  2016-01       Impact factor: 31.777

9.  A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer.

Authors:  Sudheer Gupta; Kumardeep Chaudhary; Sandeep Kumar Dhanda; Rahul Kumar; Shailesh Kumar; Manika Sehgal; Gandharva Nagpal; Gajendra P S Raghava
Journal:  PLoS One       Date:  2016-11-10       Impact factor: 3.240

Review 10.  Translating RNA sequencing into clinical diagnostics: opportunities and challenges.

Authors:  Sara A Byron; Kendall R Van Keuren-Jensen; David M Engelthaler; John D Carpten; David W Craig
Journal:  Nat Rev Genet       Date:  2016-03-21       Impact factor: 53.242

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  1 in total

1.  Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells.

Authors:  Brent M Kuenzi; Jisoo Park; Samson H Fong; Kyle S Sanchez; John Lee; Jason F Kreisberg; Jianzhu Ma; Trey Ideker
Journal:  Cancer Cell       Date:  2020-10-22       Impact factor: 31.743

  1 in total

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