Literature DB >> 27731644

Solid-State 17O NMR of Unstable Acyl-Enzyme Intermediates: A Direct Probe of Hydrogen Bonding Interactions in the Oxyanion Hole of Serine Proteases.

Aaron W Tang1, Xianqi Kong1, Victor Terskikh1,2, Gang Wu1.   

Abstract

We report preparation, trapping, and solid-state 17O NMR characterization of three unstable acyl-enzyme intermediates (≈ 26 kDa): p-N,N-dimethylamino-[17O]benzoyl-chymotrypsin, trans-o-methoxy-[17O]cinnamoyl-chymotrypsin, and trans-p-methoxy-[17O]cinnamoyl-chymotrypsin. We show that both the 17O chemical shifts and nuclear quadrupolar parameters obtained for these acyl-enzyme intermediates in the solid state are correlated with their deacylation rate constants measured in aqueous solution. With the aid of quantum mechanical calculations, the experimental 17O NMR parameters were interpreted as to reflect the hydrogen bonding interactions between the carbonyl (C═17O) functional group of the acyl moiety and the two NH groups from the protein backbone (Ser195 and Gly193) in the oxyanion hole, a general feature of all serine proteases. Our results further suggest that the 17O chemical shift and quadrupole coupling constant display distinctly different sensitivities toward different aspects of hydrogen bonding, such as hydrogen bond distance and direction. This work demonstrates the utility of 17O as a useful nuclear probe in NMR studies of enzymes.

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Year:  2016        PMID: 27731644     DOI: 10.1021/acs.jpcb.6b08798

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Structural Evidence of a Major Conformational Change Triggered by Substrate Binding in DapE Enzymes: Impact on the Catalytic Mechanism.

Authors:  Boguslaw Nocek; Cory Reidl; Anna Starus; Tahirah Heath; David Bienvenue; Jerzy Osipiuk; Robert Jedrzejczak; Andrzej Joachimiak; Daniel P Becker; Richard C Holz
Journal:  Biochemistry       Date:  2018-01-12       Impact factor: 3.162

2.  17O MAS NMR Correlation Spectroscopy at High Magnetic Fields.

Authors:  Eric G Keeler; Vladimir K Michaelis; Michael T Colvin; Ivan Hung; Peter L Gor'kov; Timothy A Cross; Zhehong Gan; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-11-30       Impact factor: 15.419

3.  17 O NMR Studies of Yeast Ubiquitin in Aqueous Solution and in the Solid State.

Authors:  Binyang Lin; Ivan Hung; Zhehong Gan; Po-Hsiu Chien; Holly L Spencer; Steven P Smith; Gang Wu
Journal:  Chembiochem       Date:  2020-11-06       Impact factor: 3.164

Review 4.  Advances in instrumentation and methodology for solid-state NMR of biological assemblies.

Authors:  Rachel W Martin; John E Kelly; Jessica I Kelz
Journal:  J Struct Biol       Date:  2018-09-08       Impact factor: 2.867

5.  Solid-state 17O NMR study of α-d-glucose: exploring new frontiers in isotopic labeling, sensitivity enhancement, and NMR crystallography.

Authors:  Jiahui Shen; Victor Terskikh; Jochem Struppe; Alia Hassan; Martine Monette; Ivan Hung; Zhehong Gan; Andreas Brinkmann; Gang Wu
Journal:  Chem Sci       Date:  2022-01-03       Impact factor: 9.825

Review 6.  17O NMR Spectroscopy: A Novel Probe for Characterizing Protein Structure and Folding.

Authors:  Srinivasan Muniyappan; Yuxi Lin; Young-Ho Lee; Jin Hae Kim
Journal:  Biology (Basel)       Date:  2021-05-21
  6 in total

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