Literature DB >> 27727439

Analysis of Heritability Using Genome-Wide Data.

Jacob B Hall1, William S Bush1.   

Abstract

Most analyses of genome-wide association data consider each variant independently without considering or adjusting for the genetic background present in the rest of the genome. New approaches to genome analysis use representations of genomic sharing to better account for confounding factors like population stratification or to directly approximate heritability through the estimated sharing of individuals in a dataset. These approaches use mixed linear models, which relate genotypic sharing to phenotypic sharing, and rely on the efficient computation of genetic sharing among individuals in a dataset. This unit describes the principles and practical application of mixed models for the analysis of genome-wide association study data. © 2016 by John Wiley & Sons, Inc.
Copyright © 2016 John Wiley & Sons, Inc.

Entities:  

Keywords:  GCTA; heritability; mixed-model analysis

Mesh:

Year:  2016        PMID: 27727439      PMCID: PMC5127448          DOI: 10.1002/cphg.25

Source DB:  PubMed          Journal:  Curr Protoc Hum Genet        ISSN: 1934-8258


  34 in total

1.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

2.  Increased accuracy of artificial selection by using the realized relationship matrix.

Authors:  B J Hayes; P M Visscher; M E Goddard
Journal:  Genet Res (Camb)       Date:  2009-02       Impact factor: 1.588

3.  A relationship matrix including full pedigree and genomic information.

Authors:  A Legarra; I Aguilar; I Misztal
Journal:  J Dairy Sci       Date:  2009-09       Impact factor: 4.034

4.  Mixed model with correction for case-control ascertainment increases association power.

Authors:  Tristan J Hayeck; Noah A Zaitlen; Po-Ru Loh; Bjarni Vilhjalmsson; Samuela Pollack; Alexander Gusev; Jian Yang; Guo-Bo Chen; Michael E Goddard; Peter M Visscher; Nick Patterson; Alkes L Price
Journal:  Am J Hum Genet       Date:  2015-04-16       Impact factor: 11.025

5.  The inheritance of liability to diseases with variable age of onset, with particular reference to diabetes mellitus.

Authors:  D S Falconer
Journal:  Ann Hum Genet       Date:  1967-08       Impact factor: 1.670

6.  Genome partitioning of genetic variation for complex traits using common SNPs.

Authors:  Jian Yang; Teri A Manolio; Louis R Pasquale; Eric Boerwinkle; Neil Caporaso; Julie M Cunningham; Mariza de Andrade; Bjarke Feenstra; Eleanor Feingold; M Geoffrey Hayes; William G Hill; Maria Teresa Landi; Alvaro Alonso; Guillaume Lettre; Peng Lin; Hua Ling; William Lowe; Rasika A Mathias; Mads Melbye; Elizabeth Pugh; Marilyn C Cornelis; Bruce S Weir; Michael E Goddard; Peter M Visscher
Journal:  Nat Genet       Date:  2011-05-08       Impact factor: 38.330

7.  Advantages and pitfalls in the application of mixed-model association methods.

Authors:  Jian Yang; Noah A Zaitlen; Michael E Goddard; Peter M Visscher; Alkes L Price
Journal:  Nat Genet       Date:  2014-02       Impact factor: 38.330

8.  Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models.

Authors:  Jacob B Hall; Jessica N Cooke Bailey; Joshua D Hoffman; Margaret A Pericak-Vance; William K Scott; Jaclyn L Kovach; Stephen G Schwartz; Anita Agarwal; Milam A Brantley; Jonathan L Haines; William S Bush
Journal:  BMC Bioinformatics       Date:  2015-10-14       Impact factor: 3.169

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Cryptic relatedness in epidemiologic collections accessed for genetic association studies: experiences from the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) study and the National Health and Nutrition Examination Surveys (NHANES).

Authors:  Jennifer Malinowski; Robert Goodloe; Kristin Brown-Gentry; Dana C Crawford
Journal:  Front Genet       Date:  2015-10-26       Impact factor: 4.599

View more
  1 in total

1.  Genome-wide meta-analysis of phytosterols reveals five novel loci and a detrimental effect on coronary atherosclerosis.

Authors:  Markus Scholz; Katrin Horn; Janne Pott; Arnd Gross; Marcus E Kleber; Graciela E Delgado; Pashupati Prasad Mishra; Holger Kirsten; Christian Gieger; Martina Müller-Nurasyid; Anke Tönjes; Peter Kovacs; Terho Lehtimäki; Olli Raitakari; Mika Kähönen; Helena Gylling; Ronny Baber; Berend Isermann; Michael Stumvoll; Markus Loeffler; Winfried März; Thomas Meitinger; Annette Peters; Joachim Thiery; Daniel Teupser; Uta Ceglarek
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 14.919

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.