Literature DB >> 27726484

Forks in the tracks: Group II introns, spliceosomes, telomeres and beyond.

Rajendra Kumar Agrawal1,2, Hong-Wei Wang3,4, Marlene Belfort2,5.   

Abstract

Group II introns are large catalytic RNAs that form a ribonucleoprotein (RNP) complex by binding to an intron-encoded protein (IEP). The IEP, which facilitates both RNA splicing and intron mobility, has multiple activities including reverse transcriptase. Recent structures of a group II intron RNP complex and of IEPs from diverse bacteria fuel arguments that group II introns are ancestrally related to eukaryotic spliceosomes as well as to telomerase and viruses. Furthermore, recent structural studies of various functional states of the spliceosome allow us to draw parallels between the group II intron RNP and the spliceosome. Here we present an overview of these studies, with an emphasis on the structure of the IEPs in their isolated and RNA-bound states and on their evolutionary relatedness. In addition, we address the conundrum of the free, albeit truncated IEPs forming dimers, whereas the IEP bound to the intron ribozyme is a monomer in the mature RNP. Future studies needed to resolve some of the outstanding issues related to group II intron RNP function and dynamics are also discussed.

Keywords:  Cryo-EM; Prp8; intron RNP structure; intron-encoded protein; reverse transcriptase; telomerase

Mesh:

Substances:

Year:  2016        PMID: 27726484      PMCID: PMC5207386          DOI: 10.1080/15476286.2016.1244595

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  23 in total

1.  Assembly of an active group II intron-maturase complex by protein dimerization.

Authors:  Robert P Rambo; Jennifer A Doudna
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

Review 3.  Group II introns: mobile ribozymes that invade DNA.

Authors:  Alan M Lambowitz; Steven Zimmerly
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

4.  Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase.

Authors:  Forrest J H Blocker; Georg Mohr; Lori H Conlan; Li Qi; Marlene Belfort; Alan M Lambowitz
Journal:  RNA       Date:  2004-12-01       Impact factor: 4.942

5.  The generality of self-splicing RNA: relationship to nuclear mRNA splicing.

Authors:  T R Cech
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

Review 6.  Group II Intron Self-Splicing.

Authors:  Anna Marie Pyle
Journal:  Annu Rev Biophys       Date:  2016-07-05       Impact factor: 12.981

7.  A widespread class of reverse transcriptase-related cellular genes.

Authors:  Eugene A Gladyshev; Irina R Arkhipova
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

8.  The group II intron ribonucleoprotein precursor is a large, loosely packed structure.

Authors:  Tao Huang; Tanvir R Shaikh; Kushol Gupta; Lydia M Contreras-Martin; Robert A Grassucci; Gregory D Van Duyne; Joachim Frank; Marlene Belfort
Journal:  Nucleic Acids Res       Date:  2010-12-03       Impact factor: 16.971

9.  Crystal structure of Prp8 reveals active site cavity of the spliceosome.

Authors:  Wojciech P Galej; Chris Oubridge; Andrew J Newman; Kiyoshi Nagai
Journal:  Nature       Date:  2013-01-23       Impact factor: 49.962

10.  Cryo-EM structure of the spliceosome immediately after branching.

Authors:  Wojciech P Galej; Max E Wilkinson; Sebastian M Fica; Chris Oubridge; Andrew J Newman; Kiyoshi Nagai
Journal:  Nature       Date:  2016-07-26       Impact factor: 49.962

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  10 in total

Review 1.  Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools.

Authors:  Marlene Belfort; Alan M Lambowitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

Review 2.  Mobile Group II Introns as Ancestral Eukaryotic Elements.

Authors:  Olga Novikova; Marlene Belfort
Journal:  Trends Genet       Date:  2017-08-14       Impact factor: 11.639

Review 3.  The group II intron maturase: a reverse transcriptase and splicing factor go hand in hand.

Authors:  Chen Zhao; Anna Marie Pyle
Journal:  Curr Opin Struct Biol       Date:  2017-05-18       Impact factor: 6.809

Review 4.  Structural Insights into the Mechanism of Group II Intron Splicing.

Authors:  Chen Zhao; Anna Marie Pyle
Journal:  Trends Biochem Sci       Date:  2017-04-21       Impact factor: 13.807

Review 5.  Origin of viruses: primordial replicators recruiting capsids from hosts.

Authors:  Mart Krupovic; Valerian V Dolja; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2019-07       Impact factor: 60.633

6.  Structural accommodations accompanying splicing of a group II intron RNP.

Authors:  Xiaolong Dong; Srivathsan Ranganathan; Guosheng Qu; Carol Lyn Piazza; Marlene Belfort
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

7.  Identification of Group II Intron RmInt1 Binding Sites in a Bacterial Genome.

Authors:  María Dolores Molina-Sánchez; Fernando Manuel García-Rodríguez; Eduardo Andrés-León; Nicolás Toro
Journal:  Front Mol Biosci       Date:  2022-02-25

8.  An overview of RNA splicing and functioning of splicing factors in land plant chloroplasts.

Authors:  Xuemei Wang; Jingyi Wang; Simin Li; Congming Lu; Na Sui
Journal:  RNA Biol       Date:  2022-01       Impact factor: 4.766

9.  Exon and protein positioning in a pre-catalytic group II intron RNP primed for splicing.

Authors:  Nan Liu; Xiaolong Dong; Cuixia Hu; Jianwei Zeng; Jiawei Wang; Jia Wang; Hong-Wei Wang; Marlene Belfort
Journal:  Nucleic Acids Res       Date:  2020-11-04       Impact factor: 16.971

Review 10.  Prokaryotic reverse transcriptases: from retroelements to specialized defense systems.

Authors:  Alejandro González-Delgado; Mario Rodríguez Mestre; Francisco Martínez-Abarca; Nicolás Toro
Journal:  FEMS Microbiol Rev       Date:  2021-11-23       Impact factor: 16.408

  10 in total

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