Literature DB >> 27726349

Nuclear Resonance Vibrational Spectroscopic Definition of Peroxy Intermediates in Nonheme Iron Sites.

Kyle D Sutherlin1, Lei V Liu1, Yong-Min Lee2, Yeonju Kwak1, Yoshitaka Yoda3, Makina Saito4, Masayuki Kurokuzu4, Yasuhiro Kobayashi4, Makoto Seto4, Lawrence Que5, Wonwoo Nam2, Edward I Solomon1,6.   

Abstract

FeIII-(hydro)peroxy intermediates have been isolated in two classes of mononuclear nonheme Fe enzymes that are important in bioremediation: the Rieske dioxygenases and the extradiol dioxygenases. The binding mode and protonation state of the peroxide moieties in these intermediates are not well-defined, due to a lack of vibrational structural data. Nuclear resonance vibrational spectroscopy (NRVS) is an important technique for obtaining vibrational information on these and other intermediates, as it is sensitive to all normal modes with Fe displacement. Here, we present the NRVS spectra of side-on FeIII-peroxy and end-on FeIII-hydroperoxy model complexes and assign these spectra using calibrated DFT calculations. We then use DFT calculations to define and understand the changes in the NRVS spectra that arise from protonation and from opening the Fe-O-O angle. This study identifies four spectroscopic handles that will enable definition of the binding mode and protonation state of FeIII-peroxy intermediates in mononuclear nonheme Fe enzymes. These structural differences are important in determining the frontier molecular orbitals available for reactivity.

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Year:  2016        PMID: 27726349      PMCID: PMC5312706          DOI: 10.1021/jacs.6b07227

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  35 in total

1.  Geometric and electronic structure/function correlations in non-heme iron enzymes.

Authors:  E I Solomon; T C Brunold; M I Davis; J N Kemsley; S K Lee; N Lehnert; F Neese; A J Skulan; Y S Yang; J Zhou
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

2.  Characterization of a high-spin non-heme Fe(III)-OOH intermediate and its quantitative conversion to an Fe(IV)═O complex.

Authors:  Feifei Li; Katlyn K Meier; Matthew A Cranswick; Mrinmoy Chakrabarti; Katherine M Van Heuvelen; Eckard Münck; Lawrence Que
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

3.  Hydrogen peroxide-coupled cis-diol formation catalyzed by naphthalene 1,2-dioxygenase.

Authors:  Matt D Wolfe; John D Lipscomb
Journal:  J Biol Chem       Date:  2002-10-25       Impact factor: 5.157

4.  Structure and reactivity of a mononuclear non-haem iron(III)-peroxo complex.

Authors:  Jaeheung Cho; Sujin Jeon; Samuel A Wilson; Lei V Liu; Eun A Kang; Joseph J Braymer; Mi Hee Lim; Britt Hedman; Keith O Hodgson; Joan Selverstone Valentine; Edward I Solomon; Wonwoo Nam
Journal:  Nature       Date:  2011-10-26       Impact factor: 49.962

5.  A new gene (alkB) of Escherichia coli that controls sensitivity to methyl methane sulfonate.

Authors:  H Kataoka; Y Yamamoto; M Sekiguchi
Journal:  J Bacteriol       Date:  1983-03       Impact factor: 3.490

Review 6.  The ins and outs of ring-cleaving dioxygenases.

Authors:  Frédéric H Vaillancourt; Jeffrey T Bolin; Lindsay D Eltis
Journal:  Crit Rev Biochem Mol Biol       Date:  2006 Jul-Aug       Impact factor: 8.250

7.  Normal-mode analysis of FeCl4- and Fe2S2Cl42- via vibrational mössbauer, resonance Raman, and FT-IR spectroscopies.

Authors:  Matt C Smith; Yuming Xiao; Hongxin Wang; Simon J George; Dimitri Coucouvanis; Markos Koutmos; Wolfgang Sturhahn; Ercan E Alp; Jiyong Zhao; Stephen P Cramer
Journal:  Inorg Chem       Date:  2005-08-08       Impact factor: 5.165

8.  Redox-inactive metal ions modulate the reactivity and oxygen release of mononuclear non-haem iron(III)-peroxo complexes.

Authors:  Suhee Bang; Yong-Min Lee; Seungwoo Hong; Kyung-Bin Cho; Yusuke Nishida; Mi Sook Seo; Ritimukta Sarangi; Shunichi Fukuzumi; Wonwoo Nam
Journal:  Nat Chem       Date:  2014-09-14       Impact factor: 24.427

9.  Comparison of high-spin and low-spin nonheme Fe(III)-OOH complexes in O-O bond homolysis and H-atom abstraction reactivities.

Authors:  Lei V Liu; Seungwoo Hong; Jaeheung Cho; Wonwoo Nam; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-02-14       Impact factor: 15.419

10.  A Long-Lived Fe(III)-(Hydroperoxo) Intermediate in the Active H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Characterization by Mössbauer, Electron Paramagnetic Resonance, and Density Functional Theory Methods.

Authors:  Katlyn K Meier; Melanie S Rogers; Elena G Kovaleva; Michael M Mbughuni; Emile L Bominaar; John D Lipscomb; Eckard Münck
Journal:  Inorg Chem       Date:  2015-10-20       Impact factor: 5.165

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  3 in total

1.  NRVS for Fe in Biology: Experiment and Basic Interpretation.

Authors:  Leland B Gee; Hongxin Wang; Stephen P Cramer
Journal:  Methods Enzymol       Date:  2017-12-16       Impact factor: 1.600

2.  NRVS Studies of the Peroxide Shunt Intermediate in a Rieske Dioxygenase and Its Relation to the Native FeII O2 Reaction.

Authors:  Kyle D Sutherlin; Brent S Rivard; Lars H Böttger; Lei V Liu; Melanie S Rogers; Martin Srnec; Kiyoung Park; Yoshitaka Yoda; Shinji Kitao; Yasuhiro Kobayashi; Makina Saito; Makoto Seto; Michael Hu; Jiyong Zhao; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-04-11       Impact factor: 15.419

3.  Elucidating the Role of O2 Uncoupling in the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme Iron Dioxygenases.

Authors:  Charlotte E Bopp; Nora M Bernet; Hans-Peter E Kohler; Thomas B Hofstetter
Journal:  ACS Environ Au       Date:  2022-07-07
  3 in total

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