Literature DB >> 16060605

Normal-mode analysis of FeCl4- and Fe2S2Cl42- via vibrational mössbauer, resonance Raman, and FT-IR spectroscopies.

Matt C Smith1, Yuming Xiao, Hongxin Wang, Simon J George, Dimitri Coucouvanis, Markos Koutmos, Wolfgang Sturhahn, Ercan E Alp, Jiyong Zhao, Stephen P Cramer.   

Abstract

[NEt(4)][FeCl(4)], [P(C(6)H(5))(4)][FeCl(4)], and [NEt(4)](2)[Fe(2)S(2)Cl(4)] have been examined using (57)Fe nuclear resonance vibrational spectroscopy (NRVS). These complexes serve as simple models for Fe-S clusters in metalloproteins. The (57)Fe partial vibrational density of states (PVDOS) spectra were interpreted by computation of the normal modes assuming Urey-Bradley force fields, using additional information from infrared and Raman spectra. Previously published force constants were used as initial values; the new constraints from NRVS frequencies and amplitudes were then used to refine the force field parameters in a nonlinear least-squares analysis. The normal-mode calculations were able to quantitatively reproduce both the frequencies and the amplitudes of the intramolecular-mode (57)Fe PVDOS. The optimized force constants for bending, stretching, and nonbonded interactions agree well with previously reported values. In addition, the NRVS technique also allowed clear observation of anion-cation lattice modes below 100 cm(-1) that are nontrivial to observe by conventional spectroscopies. These features were successfully reproduced, either by assuming whole-body motions of point-mass anions and cations or by simulations using all of the atoms in the unit cell. The advantages of a combined NRVS, Raman, and IR approach to characterization of Fe-S complexes are discussed.

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Year:  2005        PMID: 16060605     DOI: 10.1021/ic0482584

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  23 in total

1.  How nitrogenase shakes--initial information about P-cluster and FeMo-cofactor normal modes from nuclear resonance vibrational spectroscopy (NRVS).

Authors:  Yuming Xiao; Karl Fisher; Matt C Smith; William E Newton; David A Case; Simon J George; Hongxin Wang; Wolfgang Sturhahn; Ercan E Alp; Jiyong Zhao; Yoshitaka Yoda; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

2.  Energy calibration issues in nuclear resonant vibrational spectroscopy: observing small spectral shifts and making fast calibrations.

Authors:  Hongxin Wang; Yoshitaka Yoda; Weibing Dong; Songping D Huang
Journal:  J Synchrotron Radiat       Date:  2013-08-17       Impact factor: 2.616

3.  A practical guide for nuclear resonance vibrational spectroscopy (NRVS) of biochemical samples and model compounds.

Authors:  Hongxin Wang; Esen Ercan Alp; Yoshitaka Yoda; Stephen P Cramer
Journal:  Methods Mol Biol       Date:  2014

4.  Nuclear Resonance Vibrational Spectroscopy Definition of O2 Intermediates in an Extradiol Dioxygenase: Correlation to Crystallography and Reactivity.

Authors:  Kyle D Sutherlin; Yuko Wasada-Tsutsui; Michael M Mbughuni; Melanie S Rogers; Kiyoung Park; Lei V Liu; Yeonju Kwak; Martin Srnec; Lars H Böttger; Mathieu Frenette; Yoshitaka Yoda; Yasuhiro Kobayashi; Masayuki Kurokuzu; Makina Saito; Makoto Seto; Michael Hu; Jiyong Zhao; E Ercan Alp; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-11-26       Impact factor: 15.419

5.  High-resolution monochromator for iron nuclear resonance vibrational spectroscopy of biological samples.

Authors:  Yoshitaka Yoda; Kyoko Okada; Hongxin Wang; Stephen P Cramer; Makoto Seto
Journal:  Jpn J Appl Phys Pt 1       Date:  2016-11-08

6.  Characterization of iron dinitrosyl species formed in the reaction of nitric oxide with a biological Rieske center.

Authors:  Christine E Tinberg; Zachary J Tonzetich; Hongxin Wang; Loi H Do; Yoshitaka Yoda; Stephen P Cramer; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2010-12-06       Impact factor: 15.419

7.  Extended X-ray absorption fine structure and nuclear resonance vibrational spectroscopy reveal that NifB-co, a FeMo-co precursor, comprises a 6Fe core with an interstitial light atom.

Authors:  Simon J George; Robert Y Igarashi; Yuming Xiao; Jose A Hernandez; Marie Demuez; Dehua Zhao; Yoshitaka Yoda; Paul W Ludden; Luis M Rubio; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2008-04-02       Impact factor: 15.419

8.  NRVS for Fe in Biology: Experiment and Basic Interpretation.

Authors:  Leland B Gee; Hongxin Wang; Stephen P Cramer
Journal:  Methods Enzymol       Date:  2017-12-16       Impact factor: 1.600

9.  Quantitative vibrational dynamics of the metal site in a tin porphyrin: an IR, NRVS, and DFT study.

Authors:  Bogdan M Leu; Marek Z Zgierski; Christian Bischoff; Ming Li; Michael Y Hu; Jiyong Zhao; Steve W Martin; Esen Ercan Alp; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-08-20       Impact factor: 5.165

10.  Nuclear resonance vibrational spectroscopy (NRVS) of rubredoxin and MoFe protein crystals.

Authors:  Yisong Guo; Eric Brecht; Kristen Aznavour; Jay C Nix; Yuming Xiao; Hongxin Wang; Simon J George; Robert Bau; Stephen Keable; John W Peters; Michael W W Adams; Francis Jenney; Wolfgang Sturhahn; Ercan E Alp; Jiyong Zhao; Yoshitaka Yoda; Stephen P Cramer
Journal:  Hyperfine Interact       Date:  2013-12
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