Literature DB >> 27717505

Emerging Field of Cardiomics: High-Throughput Investigations into Transcriptional Regulation of Cardiovascular Development and Disease.

Christopher E Slagle1, Frank L Conlon2.   

Abstract

Congenital heart defects remain a leading cause of infant mortality in the western world, despite decades of research focusing on cardiovascular development and disease. With the recent emergence of several high-throughput technologies including RNA sequencing, chromatin-immunoprecipitation-coupled sequencing, mass-spectrometry-based proteomics analyses, and the numerous variations of these strategies, investigations into cardiac development have been transformed from candidate-based studies into whole-genome, -transcriptome, and -proteome undertakings. In this review, we discuss several reports that have emerged from our laboratory and others over the past 5 years that emphasize the versatility of large dataset-based investigations of cardiogenic transcription factors, from phenotypic validations and new gene implications to the identification of novel roles of well-studied transcriptional regulators.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  cardiovascular development; chromatin; congenital heart disease; high-throughput sequencing; proteomics; transcription factor

Mesh:

Substances:

Year:  2016        PMID: 27717505      PMCID: PMC5828029          DOI: 10.1016/j.tig.2016.09.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  66 in total

1.  Characterization of the human TBX20 gene, a new member of the T-Box gene family closely related to the Drosophila H15 gene.

Authors:  M Meins; D J Henderson; S S Bhattacharya; J C Sowden
Journal:  Genomics       Date:  2000-08-01       Impact factor: 5.736

2.  A Gro/TLE-NuRD corepressor complex facilitates Tbx20-dependent transcriptional repression.

Authors:  Erin Kaltenbrun; Todd M Greco; Christopher E Slagle; Leslie M Kennedy; Tuo Li; Ileana M Cristea; Frank L Conlon
Journal:  J Proteome Res       Date:  2013-10-03       Impact factor: 4.466

3.  GATA4 transcription factor is required for ventral morphogenesis and heart tube formation.

Authors:  C T Kuo; E E Morrisey; R Anandappa; K Sigrist; M M Lu; M S Parmacek; C Soudais; J M Leiden
Journal:  Genes Dev       Date:  1997-04-15       Impact factor: 11.361

4.  Expression pattern of novel chick T-box gene, Tbx20.

Authors:  A Iio; M Koide; K Hidaka; T Morisaki
Journal:  Dev Genes Evol       Date:  2001-10-19       Impact factor: 0.900

5.  Cooperative action of Tbx2 and Nkx2.5 inhibits ANF expression in the atrioventricular canal: implications for cardiac chamber formation.

Authors:  Petra E M H Habets; Antoon F M Moorman; Danielle E W Clout; Marian A van Roon; Merel Lingbeek; Maarten van Lohuizen; Marina Campione; Vincent M Christoffels
Journal:  Genes Dev       Date:  2002-05-15       Impact factor: 11.361

6.  Developmental expression of the Xenopus laevis Tbx20 orthologue.

Authors:  Daniel DeWitt Brown; Olav Binder; Maria Pagratis; Brian A Parr; Frank L Conlon
Journal:  Dev Genes Evol       Date:  2002-10-31       Impact factor: 0.900

7.  Reduced NODAL signaling strength via mutation of several pathway members including FOXH1 is linked to human heart defects and holoprosencephaly.

Authors:  Erich Roessler; Maia V Ouspenskaia; Jayaprakash D Karkera; Jorge I Vélez; Amy Kantipong; Felicitas Lacbawan; Peter Bowers; John W Belmont; Jeffrey A Towbin; Elizabeth Goldmuntz; Benjamin Feldman; Maximilian Muenke
Journal:  Am J Hum Genet       Date:  2008-06-05       Impact factor: 11.025

8.  The transcriptional repressor Tbx3 delineates the developing central conduction system of the heart.

Authors:  Willem M H Hoogaars; Alessandra Tessari; Antoon F M Moorman; Piet A J de Boer; Jaco Hagoort; Alexandre T Soufan; Marina Campione; Vincent M Christoffels
Journal:  Cardiovasc Res       Date:  2004-06-01       Impact factor: 10.787

9.  Foxf genes integrate tbx5 and hedgehog pathways in the second heart field for cardiac septation.

Authors:  Andrew D Hoffmann; Xinan Holly Yang; Ozanna Burnicka-Turek; Joshua D Bosman; Xiaomeng Ren; Jeffrey D Steimle; Steven A Vokes; Andrew P McMahon; Vladimir V Kalinichenko; Ivan P Moskowitz
Journal:  PLoS Genet       Date:  2014-10-30       Impact factor: 5.917

10.  Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes.

Authors:  Jill M Dowen; Zi Peng Fan; Denes Hnisz; Gang Ren; Brian J Abraham; Lyndon N Zhang; Abraham S Weintraub; Jurian Schujiers; Tong Ihn Lee; Keji Zhao; Richard A Young
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582

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  6 in total

Review 1.  Genomics and Epigenomics of Congenital Heart Defects: Expert Review and Lessons Learned in Africa.

Authors:  Nicholas Ekow Thomford; Kevin Dzobo; Nana Akyaa Yao; Emile Chimusa; Jonathan Evans; Emmanuel Okai; Paul Kruszka; Maximilian Muenke; Gordon Awandare; Ambroise Wonkam; Collet Dandara
Journal:  OMICS       Date:  2018-05

2.  Identification of Upstream Transcriptional Regulators of Ischemic Cardiomyopathy Using Cardiac RNA-Seq Meta-Analysis.

Authors:  Ahmad Alimadadi; Sachin Aryal; Ishan Manandhar; Bina Joe; Xi Cheng
Journal:  Int J Mol Sci       Date:  2020-05-14       Impact factor: 5.923

3.  The contribution of non-coding regulatory elements to cardiovascular disease.

Authors:  Diego Villar; Stephanie Frost; Panos Deloukas; Andrew Tinker
Journal:  Open Biol       Date:  2020-07-01       Impact factor: 6.411

Review 4.  Big Data in Cardiology: State-of-Art and Future Prospects.

Authors:  Haijiang Dai; Arwa Younis; Jude Dzevela Kong; Luca Puce; Georges Jabbour; Hong Yuan; Nicola Luigi Bragazzi
Journal:  Front Cardiovasc Med       Date:  2022-04-01

5.  Pregestational diabetes alters cardiac structure and function of neonatal rats through developmental plasticity.

Authors:  Md Jahangir Alam; Shravan Kumar Uppulapu; Vikas Tiwari; Bincy Varghese; Soheb Anwar Mohammed; Ramu Adela; Sudheer Kumar Arava; Sanjay K Banerjee
Journal:  Front Cardiovasc Med       Date:  2022-09-13

6.  CHD4 and the NuRD complex directly control cardiac sarcomere formation.

Authors:  Caralynn M Wilczewski; Austin J Hepperla; Takashi Shimbo; Lauren Wasson; Zachary L Robbe; Ian J Davis; Paul A Wade; Frank L Conlon
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

  6 in total

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