Literature DB >> 27711803

Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs.

R Alonso-Mori1, K Asa2, U Bergmann3, A S Brewster4, R Chatterjee4, J K Cooper5, H M Frei4, F D Fuller4, E Goggins6, S Gul4, H Fukuzawa7, D Iablonskyi8, M Ibrahim9, T Katayama10, T Kroll11, Y Kumagai8, B A McClure4, J Messinger12, K Motomura7, K Nagaya13, T Nishiyama2, C Saracini4, Y Sato2, N K Sauter4, D Sokaras11, T Takanashi8, T Togashi10, K Ueda7, W W Weare6, T-C Weng14, M Yabashi10, V K Yachandra4, I D Young4, A Zouni9, J F Kern15, J Yano16.   

Abstract

The ultra-bright femtosecond X-ray pulses provided by X-ray Free Electron Lasers (XFELs) open capabilities for studying the structure and dynamics of a wide variety of biological and inorganic systems beyond what is possible at synchrotron sources. Although the structure and chemistry at the catalytic sites have been studied intensively in both biological and inorganic systems, a full understanding of the atomic-scale chemistry requires new approaches beyond the steady state X-ray crystallography and X-ray spectroscopy at cryogenic temperatures. Following the dynamic changes in the geometric and electronic structure at ambient conditions, while overcoming X-ray damage to the redox active catalytic center, is key for deriving reaction mechanisms. Such studies become possible by using the intense and ultra-short femtosecond X-ray pulses from an XFEL, where sample is probed before it is damaged. We have developed methodology for simultaneously collecting X-ray diffraction data and X-ray emission spectra, using an energy dispersive spectrometer, at ambient conditions, and used this approach to study the room temperature structure and intermediate states of the photosynthetic water oxidizing metallo-protein, photosystem II. Moreover, we have also used this setup to simultaneously collect the X-ray emission spectra from multiple metals to follow the ultrafast dynamics of light-induced charge transfer between multiple metal sites. A Mn-Ti containing system was studied at an XFEL to demonstrate the efficacy and potential of this method.

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Year:  2016        PMID: 27711803      PMCID: PMC5177497          DOI: 10.1039/c6fd00084c

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  38 in total

1.  Kinetics of electron transfer from Q(a) to Q(b) in photosystem II.

Authors:  R de Wijn; H J van Gorkom
Journal:  Biochemistry       Date:  2001-10-02       Impact factor: 3.162

2.  Atomic inner-shell laser at 1.5-ångström wavelength pumped by an X-ray free-electron laser.

Authors:  Hitoki Yoneda; Yuichi Inubushi; Kazunori Nagamine; Yurina Michine; Haruhiko Ohashi; Hirokatsu Yumoto; Kazuto Yamauchi; Hidekazu Mimura; Hikaru Kitamura; Tetsuo Katayama; Tetsuya Ishikawa; Makina Yabashi
Journal:  Nature       Date:  2015-08-27       Impact factor: 49.962

3.  Indications of radiation damage in ferredoxin microcrystals using high-intensity X-FEL beams.

Authors:  Karol Nass; Lutz Foucar; Thomas R M Barends; Elisabeth Hartmann; Sabine Botha; Robert L Shoeman; R Bruce Doak; Roberto Alonso-Mori; Andrew Aquila; Saša Bajt; Anton Barty; Richard Bean; Kenneth R Beyerlein; Maike Bublitz; Nikolaj Drachmann; Jonas Gregersen; H Olof Jönsson; Wolfgang Kabsch; Stephan Kassemeyer; Jason E Koglin; Michael Krumrey; Daniel Mattle; Marc Messerschmidt; Poul Nissen; Linda Reinhard; Oleg Sitsel; Dimosthenis Sokaras; Garth J Williams; Stefan Hau-Riege; Nicusor Timneanu; Carl Caleman; Henry N Chapman; Sébastien Boutet; Ilme Schlichting
Journal:  J Synchrotron Radiat       Date:  2015-02-17       Impact factor: 2.616

4.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

5.  How fast can photosystem II split water? Kinetic performance at high and low frequencies.

Authors:  Gennady Ananyev; G Charles Dismukes
Journal:  Photosynth Res       Date:  2005-06       Impact factor: 3.573

6.  Simultaneous detection of electronic structure changes from two elements of a bifunctional catalyst using wavelength-dispersive X-ray emission spectroscopy and in situ electrochemistry.

Authors:  Sheraz Gul; Jia Wei Desmond Ng; Roberto Alonso-Mori; Jan Kern; Dimosthenis Sokaras; Eitan Anzenberg; Benedikt Lassalle-Kaiser; Yelena Gorlin; Tsu-Chien Weng; Petrus H Zwart; Jin Z Zhang; Uwe Bergmann; Vittal K Yachandra; Thomas F Jaramillo; Junko Yano
Journal:  Phys Chem Chem Phys       Date:  2015-03-06       Impact factor: 3.676

7.  Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses.

Authors:  Michihiro Suga; Fusamichi Akita; Kunio Hirata; Go Ueno; Hironori Murakami; Yoshiki Nakajima; Tetsuya Shimizu; Keitaro Yamashita; Masaki Yamamoto; Hideo Ago; Jian-Ren Shen
Journal:  Nature       Date:  2014-11-26       Impact factor: 49.962

8.  Binuclear TiOMn charge-transfer chromophore in mesoporous silica.

Authors:  Xiuni Wu; Walter W Weare; Heinz Frei
Journal:  Dalton Trans       Date:  2009-10-13       Impact factor: 4.390

9.  Spare quinones in the QB cavity of crystallized photosystem II from Thermosynechococcus elongatus.

Authors:  Roland Krivanek; Jan Kern; Athina Zouni; Holger Dau; Michael Haumann
Journal:  Biochim Biophys Acta       Date:  2007-02-24

10.  The Coherent X-ray Imaging instrument at the Linac Coherent Light Source.

Authors:  Mengning Liang; Garth J Williams; Marc Messerschmidt; M Marvin Seibert; Paul A Montanez; Matt Hayes; Despina Milathianaki; Andrew Aquila; Mark S Hunter; Jason E Koglin; Donald W Schafer; Serge Guillet; Armin Busse; Robert Bergan; William Olson; Kay Fox; Nathaniel Stewart; Robin Curtis; Alireza Alan Miahnahri; Sébastien Boutet
Journal:  J Synchrotron Radiat       Date:  2015-04-15       Impact factor: 2.616

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  8 in total

1.  Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.

Authors:  Pierre Aller; Allen M Orville
Journal:  Methods Mol Biol       Date:  2021

2.  Oxygen K-edge X-ray Absorption Spectra.

Authors:  Federica Frati; Myrtille O J Y Hunault; Frank M F de Groot
Journal:  Chem Rev       Date:  2020-04-10       Impact factor: 60.622

3.  Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.

Authors:  Franklin D Fuller; Sheraz Gul; Ruchira Chatterjee; E Sethe Burgie; Iris D Young; Hugo Lebrette; Vivek Srinivas; Aaron S Brewster; Tara Michels-Clark; Jonathan A Clinger; Babak Andi; Mohamed Ibrahim; Ernest Pastor; Casper de Lichtenberg; Rana Hussein; Christopher J Pollock; Miao Zhang; Claudiu A Stan; Thomas Kroll; Thomas Fransson; Clemens Weninger; Markus Kubin; Pierre Aller; Louise Lassalle; Philipp Bräuer; Mitchell D Miller; Muhamed Amin; Sergey Koroidov; Christian G Roessler; Marc Allaire; Raymond G Sierra; Peter T Docker; James M Glownia; Silke Nelson; Jason E Koglin; Diling Zhu; Matthieu Chollet; Sanghoon Song; Henrik Lemke; Mengning Liang; Dimosthenis Sokaras; Roberto Alonso-Mori; Athina Zouni; Johannes Messinger; Uwe Bergmann; Amie K Boal; J Martin Bollinger; Carsten Krebs; Martin Högbom; George N Phillips; Richard D Vierstra; Nicholas K Sauter; Allen M Orville; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

4.  X-ray Emission Spectroscopy as an in Situ Diagnostic Tool for X-ray Crystallography of Metalloproteins Using an X-ray Free-Electron Laser.

Authors:  Thomas Fransson; Ruchira Chatterjee; Franklin D Fuller; Sheraz Gul; Clemens Weninger; Dimosthenis Sokaras; Thomas Kroll; Roberto Alonso-Mori; Uwe Bergmann; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Biochemistry       Date:  2018-06-28       Impact factor: 3.162

5.  A high-throughput energy-dispersive tender X-ray spectrometer for shot-to-shot sulfur measurements.

Authors:  Baxter Abraham; Stanislaw Nowak; Clemens Weninger; Rebecca Armenta; Jim Defever; David Day; Gabriella Carini; Kazutaka Nakahara; Alessandro Gallo; Silke Nelson; Dennis Nordlund; Thomas Kroll; Mark S Hunter; Tim van Driel; Diling Zhu; Tsu Chien Weng; Roberto Alonso-Mori; Dimosthenis Sokaras
Journal:  J Synchrotron Radiat       Date:  2019-04-02       Impact factor: 2.616

6.  X-ray optics for advanced ultrafast pump-probe X-ray experiments at SACLA.

Authors:  Tetsuo Katayama; Takashi Hirano; Yuki Morioka; Yasuhisa Sano; Taito Osaka; Shigeki Owada; Tadashi Togashi; Makina Yabashi
Journal:  J Synchrotron Radiat       Date:  2019-02-22       Impact factor: 2.616

7.  Towards the spatial resolution of metalloprotein charge states by detailed modeling of XFEL crystallographic diffraction.

Authors:  Nicholas K Sauter; Jan Kern; Junko Yano; James M Holton
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-02-04       Impact factor: 7.652

8.  Beyond integration: modeling every pixel to obtain better structure factors from stills.

Authors:  Derek Mendez; Robert Bolotovsky; Asmit Bhowmick; Aaron S Brewster; Jan Kern; Junko Yano; James M Holton; Nicholas K Sauter
Journal:  IUCrJ       Date:  2020-10-24       Impact factor: 4.769

  8 in total

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