Literature DB >> 27700071

Biosynthetic Timing and Substrate Specificity for the Thiopeptide Thiomuracin.

Zhengan Zhang1, Graham A Hudson1, Nilkamal Mahanta1,2, Jonathan I Tietz1, Wilfred A van der Donk1,2, Douglas A Mitchell1,2.   

Abstract

The biosynthesis of the thiopeptide thiomuracin is a well-orchestrated process involving a multitude of posttranslational modifications. We show that six Cys residues of a precursor peptide are first cyclodehydrated and oxidized to thiazoles in an ordered, but nonlinear fashion that is leader-peptide-dependent. Then four alcohols are glutamylated and converted to alkenes in a C-to-N terminal directional process that is leader-peptide-independent. Finally, two of these alkenes undergo a formal [4 + 2] cycloaddition to form a trithiazole-substituted pyridine macrocycle. We describe here the factors that govern the substrate specificity and order of biosynthetic events that turn a ribosomal peptide into a powerful antibiotic.

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Year:  2016        PMID: 27700071      PMCID: PMC5148741          DOI: 10.1021/jacs.6b08987

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Structure and mechanism of the tRNA-dependent lantibiotic dehydratase NisB.

Authors:  Manuel A Ortega; Yue Hao; Qi Zhang; Mark C Walker; Wilfred A van der Donk; Satish K Nair
Journal:  Nature       Date:  2014-10-26       Impact factor: 49.962

2.  Identification of an Auxiliary Leader Peptide-Binding Protein Required for Azoline Formation in Ribosomal Natural Products.

Authors:  Kyle L Dunbar; Jonathan I Tietz; Courtney L Cox; Brandon J Burkhart; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2015-06-12       Impact factor: 15.419

3.  PqqD is a novel peptide chaperone that forms a ternary complex with the radical S-adenosylmethionine protein PqqE in the pyrroloquinoline quinone biosynthetic pathway.

Authors:  John A Latham; Anthony T Iavarone; Ian Barr; Prerak V Juthani; Judith P Klinman
Journal:  J Biol Chem       Date:  2015-03-27       Impact factor: 5.157

4.  Heterologous production of thiostrepton A and biosynthetic engineering of thiostrepton analogs.

Authors:  Chaoxuan Li; Feifei Zhang; Wendy L Kelly
Journal:  Mol Biosyst       Date:  2010-11-25

5.  Modularity of RiPP Enzymes Enables Designed Synthesis of Decorated Peptides.

Authors:  Debosmita Sardar; Zhenjian Lin; Eric W Schmidt
Journal:  Chem Biol       Date:  2015-07-09

6.  Ribosomally synthesized thiopeptide antibiotics targeting elongation factor Tu.

Authors:  Rowan P Morris; Jennifer A Leeds; Hans Ulrich Naegeli; Lukas Oberer; Klaus Memmert; Eric Weber; Matthew J LaMarche; Christian N Parker; Nathalie Burrer; Stacey Esterow; Andreas E Hein; Esther K Schmitt; Philipp Krastel
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

Review 7.  Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature.

Authors:  Paul G Arnison; Mervyn J Bibb; Gabriele Bierbaum; Albert A Bowers; Tim S Bugni; Grzegorz Bulaj; Julio A Camarero; Dominic J Campopiano; Gregory L Challis; Jon Clardy; Paul D Cotter; David J Craik; Michael Dawson; Elke Dittmann; Stefano Donadio; Pieter C Dorrestein; Karl-Dieter Entian; Michael A Fischbach; John S Garavelli; Ulf Göransson; Christian W Gruber; Daniel H Haft; Thomas K Hemscheidt; Christian Hertweck; Colin Hill; Alexander R Horswill; Marcel Jaspars; Wendy L Kelly; Judith P Klinman; Oscar P Kuipers; A James Link; Wen Liu; Mohamed A Marahiel; Douglas A Mitchell; Gert N Moll; Bradley S Moore; Rolf Müller; Satish K Nair; Ingolf F Nes; Gillian E Norris; Baldomero M Olivera; Hiroyasu Onaka; Mark L Patchett; Joern Piel; Martin J T Reaney; Sylvie Rebuffat; R Paul Ross; Hans-Georg Sahl; Eric W Schmidt; Michael E Selsted; Konstantin Severinov; Ben Shen; Kaarina Sivonen; Leif Smith; Torsten Stein; Roderich D Süssmuth; John R Tagg; Gong-Li Tang; Andrew W Truman; John C Vederas; Christopher T Walsh; Jonathan D Walton; Silke C Wenzel; Joanne M Willey; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

8.  ThioFinder: a web-based tool for the identification of thiopeptide gene clusters in DNA sequences.

Authors:  Jing Li; Xudong Qu; Xinyi He; Lian Duan; Guojun Wu; Dexi Bi; Zixin Deng; Wen Liu; Hong-Yu Ou
Journal:  PLoS One       Date:  2012-09-24       Impact factor: 3.240

Review 9.  Thiopeptide antibiotics: retrospective and recent advances.

Authors:  Xavier Just-Baringo; Fernando Albericio; Mercedes Álvarez
Journal:  Mar Drugs       Date:  2014-01-17       Impact factor: 5.118

10.  Structural analysis of leader peptide binding enables leader-free cyanobactin processing.

Authors:  Jesko Koehnke; Greg Mann; Andrew F Bent; Hannes Ludewig; Sally Shirran; Catherine Botting; Tomas Lebl; Wael Houssen; Marcel Jaspars; James H Naismith
Journal:  Nat Chem Biol       Date:  2015-06-22       Impact factor: 15.040

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  26 in total

Review 1.  Elucidating and engineering thiopeptide biosynthesis.

Authors:  Philip R Bennallack; Joel S Griffitts
Journal:  World J Microbiol Biotechnol       Date:  2017-05-11       Impact factor: 3.312

Review 2.  Mechanistic Understanding of Lanthipeptide Biosynthetic Enzymes.

Authors:  Lindsay M Repka; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  Chem Rev       Date:  2017-01-30       Impact factor: 60.622

3.  Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae.

Authors:  Liujie Huo; Xiling Zhao; Jeella Z Acedo; Paola Estrada; Satish K Nair; Wilfred A van der Donk
Journal:  Chembiochem       Date:  2019-11-04       Impact factor: 3.164

Review 4.  Dehydroamino acids: chemical multi-tools for late-stage diversification.

Authors:  Jonathan W Bogart; Albert A Bowers
Journal:  Org Biomol Chem       Date:  2019-04-10       Impact factor: 3.876

Review 5.  Thiopeptides: antibiotics with unique chemical structures and diverse biological activities.

Authors:  Derek C K Chan; Lori L Burrows
Journal:  J Antibiot (Tokyo)       Date:  2020-12-21       Impact factor: 2.649

Review 6.  RiPP antibiotics: biosynthesis and engineering potential.

Authors:  Graham A Hudson; Douglas A Mitchell
Journal:  Curr Opin Microbiol       Date:  2018-03-10       Impact factor: 7.934

7.  Thiopeptide Pyridine Synthase TbtD Catalyzes an Intermolecular Formal Aza-Diels-Alder Reaction.

Authors:  Jonathan W Bogart; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2019-01-22       Impact factor: 15.419

8.  Bioinformatic Expansion and Discovery of Thiopeptide Antibiotics.

Authors:  Christopher J Schwalen; Graham A Hudson; Bryce Kille; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2018-07-20       Impact factor: 15.419

9.  Interception of the Bycroft-Gowland Intermediate in the Enzymatic Macrocyclization of Thiopeptides.

Authors:  Jonathan W Bogart; Nicholas J Kramer; Aneta Turlik; Rachel M Bleich; Daniel S Catlin; Frank C Schroeder; Satish K Nair; R Thomas Williamson; K N Houk; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2020-07-16       Impact factor: 15.419

10.  Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides.

Authors:  Steven R Fleming; Tessa E Bartges; Alexander A Vinogradov; Christine L Kirkpatrick; Yuki Goto; Hiroaki Suga; Leslie M Hicks; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

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