Literature DB >> 27697563

Development of a Bacillus subtilis cell-free transcription-translation system for prototyping regulatory elements.

Richard Kelwick1, Alexander J Webb1, James T MacDonald1, Paul S Freemont2.   

Abstract

Cell-free transcription-translation systems were originally applied towards in vitro protein production. More recently, synthetic biology is enabling these systems to be used within a systematic design context for prototyping DNA regulatory elements, genetic logic circuits and biosynthetic pathways. The Gram-positive soil bacterium, Bacillus subtilis, is an established model organism of industrial importance. To this end, we developed several B. subtilis-based cell-free systems. Our improved B. subtilis WB800N-based system was capable of producing 0.8µM GFP, which gave a ~72x fold-improvement when compared with a B. subtilis 168 cell-free system. Our improved system was applied towards the prototyping of a B. subtilis promoter library in which we engineered several promoters, derived from the wild-type Pgrac (σA) promoter, that display a range of comparable in vitro and in vivo transcriptional activities. Additionally, we demonstrate the cell-free characterisation of an inducible expression system, and the activity of a model enzyme - renilla luciferase.
Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bacillus subtilis; Cell-free transcription-translation; Luciferase assay; Promoter library; Regulatory element prototyping; Synthetic biology

Mesh:

Substances:

Year:  2016        PMID: 27697563     DOI: 10.1016/j.ymben.2016.09.008

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  24 in total

1.  Cell-free Protein Expression Using the Rapidly Growing Bacterium Vibrio natriegens.

Authors:  Daniel J Wiegand; Henry H Lee; Nili Ostrov; George M Church
Journal:  J Vis Exp       Date:  2019-03-14       Impact factor: 1.355

2.  Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems.

Authors:  Ryan Marshall; Colin S Maxwell; Scott P Collins; Chase L Beisel; Vincent Noireaux
Journal:  Biotechnol Bioeng       Date:  2017-05-23       Impact factor: 4.530

3.  Variability in cell-free expression reactions can impact qualitative genetic circuit characterization.

Authors:  Katherine A Rhea; Nathan D McDonald; Stephanie D Cole; Vincent Noireaux; Matthew W Lux; Patricia E Buckley
Journal:  Synth Biol (Oxf)       Date:  2022-08-02

4.  An efficient cell-free protein synthesis platform for producing proteins with pyrrolysine-based noncanonical amino acids.

Authors:  Arnaz Ranji Charna; Benjamin J Des Soye; Ioanni Ntai; Neil L Kelleher; Michael C Jewett
Journal:  Biotechnol J       Date:  2022-06-09       Impact factor: 5.726

5.  Traditional protocols and optimization methods lead to absent expression in a mycoplasma cell-free gene expression platform.

Authors:  Andrei Sakai; Christopher R Deich; Frank H T Nelissen; Aafke J Jonker; Daniela M de C Bittencourt; Christopher P Kempes; Kim S Wise; Hans A Heus; Wilhelm T S Huck; Katarzyna P Adamala; John I Glass
Journal:  Synth Biol (Oxf)       Date:  2022-05-21

6.  Deconstructing Cell-Free Extract Preparation for in Vitro Activation of Transcriptional Genetic Circuitry.

Authors:  Adam D Silverman; Nancy Kelley-Loughnane; Julius B Lucks; Michael C Jewett
Journal:  ACS Synth Biol       Date:  2019-01-29       Impact factor: 5.110

7.  Anaerobic Conditioning of E. coli Cell Lysate for Enhanced In Vitro Protein Synthesis.

Authors:  By Denis Tamiev; Jared L Dopp; Nigel F Reuel
Journal:  ACS Synth Biol       Date:  2021-03-24       Impact factor: 5.110

8.  Cell-free Translation: Preparation and Validation of Translation-competent Extracts from Saccharomyces cerevisiae.

Authors:  Brandon M Trainor; Anton A Komar; Dimitri G Pestov; Natalia Shcherbik
Journal:  Bio Protoc       Date:  2021-09-20

Review 9.  Bacterial cell-free expression technology to in vitro systems engineering and optimization.

Authors:  Filippo Caschera
Journal:  Synth Syst Biotechnol       Date:  2017-08-07

10.  Development and comparison of cell-free protein synthesis systems derived from typical bacterial chassis.

Authors:  Liyuan Zhang; Xiaomei Lin; Ting Wang; Wei Guo; Yuan Lu
Journal:  Bioresour Bioprocess       Date:  2021-07-06
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