Literature DB >> 27694978

Precision medicine from the renal cancer genome.

Yasser Riazalhosseini1,2, Mark Lathrop1,2.   

Abstract

Genomics is revolutionizing our understanding of the molecular basis of renal cell carcinoma (RCC). The advent of unbiased genome-wide association studies has led to the discovery of previously unrecognized genetic predisposing factors that impact an individual's risk of developing RCC. Moreover, large-scale investigations of somatic alterations of the genomic and transcriptomic landscapes in tumours using next-generation sequencing technology have revealed new information on the molecular pathways that are characteristically disrupted in various RCC subtypes. Sequencing studies have revealed that epigenetic machinery and chromatin remodelling complexes are disrupted in >80% of clear cell RCC tumours, the most common form of the disease. The growing knowledge of subtype-specific molecular abnormalities arising from genomics has opened new avenues towards the development of molecular diagnostics for RCC subtypes, and for the rational design of therapeutic approaches tailored to patients based on the molecular profiles of their tumours. Genomic studies have also pinpointed a possible role of environmental exposure to aristolochic acid, a nephrotoxin, in the genesis of the disease in some regions of central Europe. In this Review, we discuss the impact of genomics in identifying the genes and environmental exposures involved in disease susceptibility, and in discovering the molecular pathways that are disrupted somatically in different RCC subtypes. Further, we explore the possibilities provided by this genomic knowledge in providing a precision medicine approach for diagnosing and treating RCC.

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Year:  2016        PMID: 27694978     DOI: 10.1038/nrneph.2016.133

Source DB:  PubMed          Journal:  Nat Rev Nephrol        ISSN: 1759-5061            Impact factor:   28.314


  127 in total

1.  The somatic genomic landscape of chromophobe renal cell carcinoma.

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Journal:  Cancer Cell       Date:  2014-08-21       Impact factor: 31.743

2.  A SUMOylation-defective MITF germline mutation predisposes to melanoma and renal carcinoma.

Authors:  Corine Bertolotto; Fabienne Lesueur; Sandy Giuliano; Thomas Strub; Mahaut de Lichy; Karine Bille; Philippe Dessen; Benoit d'Hayer; Hamida Mohamdi; Audrey Remenieras; Eve Maubec; Arnaud de la Fouchardière; Vincent Molinié; Pierre Vabres; Stéphane Dalle; Nicolas Poulalhon; Tanguy Martin-Denavit; Luc Thomas; Pascale Andry-Benzaquen; Nicolas Dupin; Françoise Boitier; Annick Rossi; Jean-Luc Perrot; Bruno Labeille; Caroline Robert; Bernard Escudier; Olivier Caron; Laurence Brugières; Simon Saule; Betty Gardie; Sophie Gad; Stéphane Richard; Jérôme Couturier; Bin Tean Teh; Paola Ghiorzo; Lorenza Pastorino; Susana Puig; Celia Badenas; Hakan Olsson; Christian Ingvar; Etienne Rouleau; Rosette Lidereau; Philippe Bahadoran; Philippe Vielh; Eve Corda; Hélène Blanché; Diana Zelenika; Pilar Galan; François Aubin; Bertrand Bachollet; Céline Becuwe; Pascaline Berthet; Yves Jean Bignon; Valérie Bonadona; Jean-Louis Bonafe; Marie-Noëlle Bonnet-Dupeyron; Fréderic Cambazard; Jacqueline Chevrant-Breton; Isabelle Coupier; Sophie Dalac; Liliane Demange; Michel d'Incan; Catherine Dugast; Laurence Faivre; Lynda Vincent-Fétita; Marion Gauthier-Villars; Brigitte Gilbert; Florent Grange; Jean-Jacques Grob; Philippe Humbert; Nicolas Janin; Pascal Joly; Delphine Kerob; Christine Lasset; Dominique Leroux; Julien Levang; Jean-Marc Limacher; Cristina Livideanu; Michel Longy; Alain Lortholary; Dominique Stoppa-Lyonnet; Sandrine Mansard; Ludovic Mansuy; Karine Marrou; Christine Matéus; Christine Maugard; Nicolas Meyer; Catherine Nogues; Pierre Souteyrand; Laurence Venat-Bouvet; Hélène Zattara; Valérie Chaudru; Gilbert M Lenoir; Mark Lathrop; Irwin Davidson; Marie-Françoise Avril; Florence Demenais; Robert Ballotti; Brigitte Bressac-de Paillerets
Journal:  Nature       Date:  2011-10-19       Impact factor: 49.962

3.  The tumour suppressor protein VHL targets hypoxia-inducible factors for oxygen-dependent proteolysis.

Authors:  P H Maxwell; M S Wiesener; G W Chang; S C Clifford; E C Vaux; M E Cockman; C C Wykoff; C W Pugh; E R Maher; P J Ratcliffe
Journal:  Nature       Date:  1999-05-20       Impact factor: 49.962

4.  Loss of BAP1 protein expression is an independent marker of poor prognosis in patients with low-risk clear cell renal cell carcinoma.

Authors:  Richard W Joseph; Payal Kapur; Daniel J Serie; Jeanette E Eckel-Passow; Mansi Parasramka; Thai Ho; John C Cheville; Eugene Frenkel; Dinesh Rakheja; James Brugarolas; Alexander Parker
Journal:  Cancer       Date:  2013-12-30       Impact factor: 6.860

5.  Germline mutations in FH predispose to dominantly inherited uterine fibroids, skin leiomyomata and papillary renal cell cancer.

Authors:  Ian P M Tomlinson; N Afrina Alam; Andrew J Rowan; Ella Barclay; Emma E M Jaeger; David Kelsell; Irene Leigh; Patricia Gorman; Hanan Lamlum; Shamima Rahman; Rebecca R Roylance; Simon Olpin; Stephen Bevan; Karen Barker; Nicholas Hearle; Richard S Houlston; Maija Kiuru; Rainer Lehtonen; Auli Karhu; Susa Vilkki; Päivi Laiho; Carita Eklund; Outi Vierimaa; Kristiina Aittomäki; Marja Hietala; Pertti Sistonen; Anders Paetau; Reijo Salovaara; Riitta Herva; Virpi Launonen; Lauri A Aaltonen
Journal:  Nat Genet       Date:  2002-02-25       Impact factor: 38.330

6.  Effects on survival of BAP1 and PBRM1 mutations in sporadic clear-cell renal-cell carcinoma: a retrospective analysis with independent validation.

Authors:  Payal Kapur; Samuel Peña-Llopis; Alana Christie; Leah Zhrebker; Andrea Pavía-Jiménez; W Kimryn Rathmell; Xian-Jin Xie; James Brugarolas
Journal:  Lancet Oncol       Date:  2013-01-16       Impact factor: 41.316

7.  Genetic and epigenetic analysis of von Hippel-Lindau (VHL) gene alterations and relationship with clinical variables in sporadic renal cancer.

Authors:  Rosamonde E Banks; Prasanna Tirukonda; Claire Taylor; Nick Hornigold; Dewi Astuti; Dena Cohen; Eamonn R Maher; Anthea J Stanley; Patricia Harnden; Adrian Joyce; Margaret Knowles; Peter J Selby
Journal:  Cancer Res       Date:  2006-02-15       Impact factor: 12.701

8.  A population--based case--control study of renal cell carcinoma.

Authors:  J K McLaughlin; J S Mandel; W J Blot; L M Schuman; E S Mehl; J F Fraumeni
Journal:  J Natl Cancer Inst       Date:  1984-02       Impact factor: 13.506

9.  CUL3 and NRF2 mutations confer an NRF2 activation phenotype in a sporadic form of papillary renal cell carcinoma.

Authors:  Aikseng Ooi; Karl Dykema; Asif Ansari; David Petillo; John Snider; Richard Kahnoski; John Anema; David Craig; John Carpten; Bin-Tean Teh; Kyle A Furge
Journal:  Cancer Res       Date:  2013-01-30       Impact factor: 12.701

10.  Aristolochic acid exposure in Romania and implications for renal cell carcinoma.

Authors:  Robert J Turesky; Byeong Hwa Yun; Paul Brennan; Dana Mates; Viorel Jinga; Patricia Harnden; Rosamonde E Banks; Helene Blanche; Marie-Therese Bihoreau; Priscilia Chopard; Louis Letourneau; G Mark Lathrop; Ghislaine Scelo
Journal:  Br J Cancer       Date:  2015-12-10       Impact factor: 7.640

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  24 in total

Review 1.  Metabolic reprogramming in clear cell renal cell carcinoma.

Authors:  Hiromi I Wettersten; Omran Abu Aboud; Primo N Lara; Robert H Weiss
Journal:  Nat Rev Nephrol       Date:  2017-05-08       Impact factor: 28.314

Review 2.  Targeted therapies for renal cell carcinoma.

Authors:  Edwin M Posadas; Suwicha Limvorasak; Robert A Figlin
Journal:  Nat Rev Nephrol       Date:  2017-07-10       Impact factor: 28.314

3.  Identification of a differentiation-related prognostic nomogram based on single-cell RNA sequencing in clear cell renal cell carcinoma.

Authors:  Zhi-Nan Xia; Jing-Gen Wu; Wen-Hao Yao; Yu-Yang Meng; Wen-Gang Jian; Teng-Da Wang; Wei Xue; Yi-Peng Yu; Li-Cheng Cai; Xing-Yuan Wang; Peng Zhang; Zhi-Yuan Li; Hao Zhou; Zhi-Cheng Jiang; Jia-Yu Zhou; Cheng Zhang
Journal:  Sci Rep       Date:  2022-06-29       Impact factor: 4.996

Review 4.  Precision Medicine: An Optimal Approach to Patient Care in Renal Cell Carcinoma.

Authors:  Revati Sharma; George Kannourakis; Prashanth Prithviraj; Nuzhat Ahmed
Journal:  Front Med (Lausanne)       Date:  2022-06-14

5.  DNMT1-maintained hypermethylation of Krüppel-like factor 5 involves in the progression of clear cell renal cell carcinoma.

Authors:  Rong-Jie Fu; Wei He; Xiao-Bo Wang; Lei Li; Huan-Bin Zhao; Xiao-Ye Liu; Zhi Pang; Guo-Qiang Chen; Lei Huang; Ke-Wen Zhao
Journal:  Cell Death Dis       Date:  2017-07-27       Impact factor: 8.469

Review 6.  Epigenome Aberrations: Emerging Driving Factors of the Clear Cell Renal Cell Carcinoma.

Authors:  Ali Mehdi; Yasser Riazalhosseini
Journal:  Int J Mol Sci       Date:  2017-08-16       Impact factor: 5.923

7.  Intermittent hypoxia increases kidney tumor vascularization in a murine model of sleep apnea.

Authors:  Antoni Vilaseca; Noelia Campillo; Marta Torres; Mireia Musquera; David Gozal; Josep M Montserrat; Antonio Alcaraz; Karim A Touijer; Ramon Farré; Isaac Almendros
Journal:  PLoS One       Date:  2017-06-08       Impact factor: 3.240

8.  Stratification of clear cell renal cell carcinoma (ccRCC) genomes by gene-directed copy number alteration (CNA) analysis.

Authors:  H-J Thiesen; F Steinbeck; M Maruschke; D Koczan; B Ziems; O W Hakenberg
Journal:  PLoS One       Date:  2017-05-09       Impact factor: 3.240

9.  Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma.

Authors:  Madeleine Arseneault; Jean Monlong; Naveen S Vasudev; Ruhina S Laskar; Maryam Safisamghabadi; Patricia Harnden; Lars Egevad; Nazanin Nourbehesht; Pudchalaluck Panichnantakul; Ivana Holcatova; Antonin Brisuda; Vladimir Janout; Helena Kollarova; Lenka Foretova; Marie Navratilova; Dana Mates; Viorel Jinga; David Zaridze; Anush Mukeria; Pouria Jandaghi; Paul Brennan; Alvis Brazma; Jorg Tost; Ghislaine Scelo; Rosamonde E Banks; Mark Lathrop; Guillaume Bourque; Yasser Riazalhosseini
Journal:  Sci Rep       Date:  2017-03-23       Impact factor: 4.379

10.  Decreased TGFBR3/betaglycan expression enhances the metastatic abilities of renal cell carcinoma cells through TGF-β-dependent and -independent mechanisms.

Authors:  Jun Nishida; Kohei Miyazono; Shogo Ehata
Journal:  Oncogene       Date:  2018-02-02       Impact factor: 9.867

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