Literature DB >> 27694850

Dynamic peptide libraries for the discovery of supramolecular nanomaterials.

Charalampos G Pappas1,2, Ramim Shafi1, Ivan R Sasselli2, Henry Siccardi1, Tong Wang3, Vishal Narang1, Rinat Abzalimov1, Nadeesha Wijerathne1,4,5, Rein V Ulijn1,2,4,5.   

Abstract

Sequence-specific polymers, such as oligonucleotides and peptides, can be used as building blocks for functional supramolecular nanomaterials. The design and selection of suitable self-assembling sequences is, however, challenging because of the vast combinatorial space available. Here we report a methodology that allows the peptide sequence space to be searched for self-assembling structures. In this approach, unprotected homo- and heterodipeptides (including aromatic, aliphatic, polar and charged amino acids) are subjected to continuous enzymatic condensation, hydrolysis and sequence exchange to create a dynamic combinatorial peptide library. The free-energy change associated with the assembly process itself gives rise to selective amplification of self-assembling candidates. By changing the environmental conditions during the selection process, different sequences and consequent nanoscale morphologies are selected.

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Year:  2016        PMID: 27694850     DOI: 10.1038/nnano.2016.169

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  41 in total

Review 1.  Beyond binding: using phage display to select for structure, folding and enzymatic activity in proteins.

Authors:  P Forrer; S Jung; A Plückthun
Journal:  Curr Opin Struct Biol       Date:  1999-08       Impact factor: 6.809

2.  Self-assembly at all scales.

Authors:  George M Whitesides; Bartosz Grzybowski
Journal:  Science       Date:  2002-03-29       Impact factor: 47.728

3.  Biomimetic synthesis and patterning of silver nanoparticles.

Authors:  Rajesh R Naik; Sarah J Stringer; Gunjan Agarwal; Sharon E Jones; Morley O Stone
Journal:  Nat Mater       Date:  2002-11       Impact factor: 43.841

Review 4.  Fabrication of novel biomaterials through molecular self-assembly.

Authors:  Shuguang Zhang
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

5.  Solvent selection for solid-to-solid synthesis.

Authors:  Rein V Ulijn; Luigi De Martin; Lucia Gardossi; Anja E M Janssen; Barry D Moore; Peter J Halling
Journal:  Biotechnol Bioeng       Date:  2002-12-05       Impact factor: 4.530

6.  Enzyme-assisted self-assembly under thermodynamic control.

Authors:  Richard J Williams; Andrew M Smith; Richard Collins; Nigel Hodson; Apurba K Das; Rein V Ulijn
Journal:  Nat Nanotechnol       Date:  2008-12-21       Impact factor: 39.213

7.  Spontaneous assembly of a self-complementary oligopeptide to form a stable macroscopic membrane.

Authors:  S Zhang; T Holmes; C Lockshin; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

Review 8.  Nanomaterials. Programmable materials and the nature of the DNA bond.

Authors:  Matthew R Jones; Nadrian C Seeman; Chad A Mirkin
Journal:  Science       Date:  2015-02-20       Impact factor: 47.728

Review 9.  Functional supramolecular polymers.

Authors:  T Aida; E W Meijer; S I Stupp
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

10.  Dramatic specific-ion effect in supramolecular hydrogels.

Authors:  Sangita Roy; Nadeem Javid; Pim W J M Frederix; Dimitrios A Lamprou; Andrew J Urquhart; Neil T Hunt; Peter J Halling; Rein V Ulijn
Journal:  Chemistry       Date:  2012-08-06       Impact factor: 5.236

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  30 in total

1.  Self-assembly: Materials from a peptide soup.

Authors:  Thomas M Hermans
Journal:  Nat Nanotechnol       Date:  2016-11-08       Impact factor: 39.213

2.  Organization of Amino Acids into Layered Supramolecular Secondary Structures.

Authors:  Santu Bera; Sudipta Mondal; Sigal Rencus-Lazar; Ehud Gazit
Journal:  Acc Chem Res       Date:  2018-08-10       Impact factor: 22.384

Review 3.  Physical and Chemical Factors Influencing the Printability of Hydrogel-based Extrusion Bioinks.

Authors:  Sang Cheon Lee; Gregory Gillispie; Peter Prim; Sang Jin Lee
Journal:  Chem Rev       Date:  2020-08-20       Impact factor: 60.622

4.  Peptide supramolecular materials for therapeutics.

Authors:  Kohei Sato; Mark P Hendricks; Liam C Palmer; Samuel I Stupp
Journal:  Chem Soc Rev       Date:  2018-10-15       Impact factor: 54.564

5.  A theoretical study of polymorphism in VQIVYK fibrils.

Authors:  Jaehoon Yang; Mithila V Agnihotri; Carol J Huseby; Jeff Kuret; Sherwin J Singer
Journal:  Biophys J       Date:  2021-02-09       Impact factor: 4.033

6.  Host-Guest Induced Peptide Folding with Sequence-Specific Structural Chirality.

Authors:  David E Clarke; Guanglu Wu; Ce Wu; Oren A Scherman
Journal:  J Am Chem Soc       Date:  2021-04-16       Impact factor: 15.419

Review 7.  New Bioengineering Breakthroughs and Enabling Tools in Regenerative Medicine.

Authors:  Alvaro Mata; Helena S Azevedo; Lorenzo Botto; Nuria Gavara; Lei Su
Journal:  Curr Stem Cell Rep       Date:  2017-05-04

Review 8.  Peptide-templated noble metal catalysts: syntheses and applications.

Authors:  Wei Wang; Caleb F Anderson; Zongyuan Wang; Wei Wu; Honggang Cui; Chang-Jun Liu
Journal:  Chem Sci       Date:  2017-02-14       Impact factor: 9.825

9.  Engineered isopeptide bond stabilized fibrin inspired nanoscale peptide based sealants for efficient blood clotting.

Authors:  Snehasish Ghosh; Sanchita Mukherjee; Chiranjit Dutta; Kasturee Chakraborty; Paramita Gayen; Somnath Jan; Dhananjay Bhattacharyya; Rituparna Sinha Roy
Journal:  Sci Rep       Date:  2017-07-26       Impact factor: 4.379

10.  Self-selection of dissipative assemblies driven by primitive chemical reaction networks.

Authors:  Marta Tena-Solsona; Caren Wanzke; Benedikt Riess; Andreas R Bausch; Job Boekhoven
Journal:  Nat Commun       Date:  2018-05-23       Impact factor: 14.919

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