Literature DB >> 19119277

Enzyme-assisted self-assembly under thermodynamic control.

Richard J Williams, Andrew M Smith, Richard Collins, Nigel Hodson, Apurba K Das, Rein V Ulijn.   

Abstract

The production of functional molecular architectures through self-assembly is commonplace in biology, but despite advances, it is still a major challenge to achieve similar complexity in the laboratory. Self-assembled structures that are reproducible and virtually defect free are of interest for applications in three-dimensional cell culture, templating, biosensing and supramolecular electronics. Here, we report the use of reversible enzyme-catalysed reactions to drive self-assembly. In this approach, the self-assembly of aromatic short peptide derivatives provides a driving force that enables a protease enzyme to produce building blocks in a reversible and spatially confined manner. We demonstrate that this system combines three features: (i) self-correction--fully reversible self-assembly under thermodynamic control; (ii) component-selection--the ability to amplify the most stable molecular self-assembly structures in dynamic combinatorial libraries; and (iii) spatiotemporal confinement of nucleation and structure growth. Enzyme-assisted self-assembly therefore provides control in bottom-up fabrication of nanomaterials that could ultimately lead to functional nanostructures with enhanced complexities and fewer defects.

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Year:  2008        PMID: 19119277     DOI: 10.1038/nnano.2008.378

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  23 in total

1.  Controlling beta-sheet assembly in genetically engineered silk by enzymatic phosphorylation/dephosphorylation.

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Journal:  Biochemistry       Date:  2000-10-17       Impact factor: 3.162

2.  Programmed self-sorting of coiled coils with leucine and hexafluoroleucine cores.

Authors:  B Bilgiçer; X Xing; K Kumar
Journal:  J Am Chem Soc       Date:  2001-11-28       Impact factor: 15.419

3.  Semi-wet peptide/protein array using supramolecular hydrogel.

Authors:  Shigeki Kiyonaka; Kazuki Sada; Ibuki Yoshimura; Seiji Shinkai; Nobuo Kato; Itaru Hamachi
Journal:  Nat Mater       Date:  2003-12-07       Impact factor: 43.841

4.  Probing the solvent-assisted nucleation pathway in chemical self-assembly.

Authors:  Pascal Jonkheijm; Paul van der Schoot; Albertus P H J Schenning; E W Meijer
Journal:  Science       Date:  2006-07-07       Impact factor: 47.728

5.  In vitro and in vivo enzymatic formation of supramolecular hydrogels based on self-assembled nanofibers of a beta-amino acid derivative.

Authors:  Zhimou Yang; Gaolin Liang; Manlung Ma; Yuan Gao; Bing Xu
Journal:  Small       Date:  2007-04       Impact factor: 13.281

Review 6.  Life as a nanoscale phenomenon.

Authors:  Stephen Mann
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

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Authors:  S Zhang; T Holmes; C Lockshin; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

8.  Responsive gels formed by the spontaneous self-assembly of peptides into polymeric beta-sheet tapes.

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Journal:  Nature       Date:  1997-03-20       Impact factor: 49.962

9.  Nonspecific protease-catalyzed hydrolysis/synthesis of a mixture of peptides: product diversity and ligand amplification by a molecular trap.

Authors:  P G Swann; R A Casanova; A Desai; M M Frauenhoff; M Urbancic; U Slomczynska; A J Hopfinger; G C Le Breton; D L Venton
Journal:  Biopolymers       Date:  1996       Impact factor: 2.505

10.  Gelation-driven component selection in the generation of constitutional dynamic hydrogels based on guanine-quartet formation.

Authors:  Nampally Sreenivasachary; Jean-Marie Lehn
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-19       Impact factor: 11.205

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  64 in total

1.  Switching of Self-Assembly in a Peptide Nanostructure with a Specific Enzyme.

Authors:  Matthew J Webber; Christina J Newcomb; Ronit Bitton; Samuel I Stupp
Journal:  Soft Matter       Date:  2011-10-21       Impact factor: 3.679

2.  Self-assembly and self-replication of short amphiphilic β-sheet peptides.

Authors:  Valery Bourbo; Maayan Matmor; Elina Shtelman; Boris Rubinov; Nurit Ashkenasy; Gonen Ashkenasy
Journal:  Orig Life Evol Biosph       Date:  2011-12-03       Impact factor: 1.950

3.  Assembly pathway of a designed alpha-helical protein fiber.

Authors:  Elizabeth H C Bromley; Kevin J Channon; Patrick J S King; Zahra N Mahmoud; Eleanor F Banwell; Michael F Butler; Matthew P Crump; Timothy R Dafforn; Matthew R Hicks; Jonathan D Hirst; Alison Rodger; Derek N Woolfson
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

4.  Biocatalytic induction of supramolecular order.

Authors:  Andrew R Hirst; Sangita Roy; Meenakshi Arora; Apurba K Das; Nigel Hodson; Paul Murray; Stephen Marshall; Nadeem Javid; Jan Sefcik; Job Boekhoven; Jan H van Esch; Stefano Santabarbara; Neil T Hunt; Rein V Ulijn
Journal:  Nat Chem       Date:  2010-10-10       Impact factor: 24.427

5.  Enzyme-directed assembly and manipulation of organic nanomaterials.

Authors:  Michael E Hahn; Nathan C Gianneschi
Journal:  Chem Commun (Camb)       Date:  2011-09-30       Impact factor: 6.222

Review 6.  Supramolecular biomaterials.

Authors:  Matthew J Webber; Eric A Appel; E W Meijer; Robert Langer
Journal:  Nat Mater       Date:  2016-01       Impact factor: 43.841

Review 7.  Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials.

Authors:  Xuewen Du; Jie Zhou; Junfeng Shi; Bing Xu
Journal:  Chem Rev       Date:  2015-12-08       Impact factor: 60.622

8.  Instructed Assembly as Context-Dependent Signaling for the Death and Morphogenesis of Cells.

Authors:  Huaimin Wang; Zhaoqianqi Feng; Bing Xu
Journal:  Angew Chem Int Ed Engl       Date:  2019-03-21       Impact factor: 15.336

9.  Supramolecular hydrogel of kanamycin selectively sequesters 16S rRNA.

Authors:  Zhimou Yang; Yi Kuang; Xinming Li; Ning Zhou; Ye Zhang; Bing Xu
Journal:  Chem Commun (Camb)       Date:  2012-08-08       Impact factor: 6.222

10.  Preclinical development of drug delivery systems for paclitaxel-based cancer chemotherapy.

Authors:  Feihu Wang; Michael Porter; Alexandros Konstantopoulos; Pengcheng Zhang; Honggang Cui
Journal:  J Control Release       Date:  2017-09-25       Impact factor: 9.776

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