Literature DB >> 27684186

Deconvolution of the Human Endothelial Transcriptome.

Christoph D Rau1, Chen Gao1, Yibin Wang2.   

Abstract

A systems approach deconvolutes genes specific to and enriched in endothelium from whole-organ transcriptome data, with applications to other cell types and tissues.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Year:  2016        PMID： 27684186      PMCID： PMC5394198          DOI： 10.1016/j.cels.2016.09.006

Source DB:  PubMed          Journal:  Cell Syst        ISSN： 2405-4712            Impact factor:   10.304


  10 in total

1.  MMAD: microarray microdissection with analysis of differences is a computational tool for deconvoluting cell type-specific contributions from tissue samples.

Authors:  David A Liebner; Kun Huang; Jeffrey D Parvin
Journal:  Bioinformatics       Date:  2013-10-01       Impact factor: 6.937

Review 2.  The technology and biology of single-cell RNA sequencing.

Authors:  Aleksandra A Kolodziejczyk; Jong Kyoung Kim; Valentine Svensson; John C Marioni; Sarah A Teichmann
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

Review 3.  Computational and analytical challenges in single-cell transcriptomics.

Authors:  Oliver Stegle; Sarah A Teichmann; John C Marioni
Journal:  Nat Rev Genet       Date:  2015-01-28       Impact factor: 53.242

4.  Proteomics. Tissue-based map of the human proteome.

Authors:  Mathias Uhlén; Linn Fagerberg; Björn M Hallström; Cecilia Lindskog; Per Oksvold; Adil Mardinoglu; Åsa Sivertsson; Caroline Kampf; Evelina Sjöstedt; Anna Asplund; IngMarie Olsson; Karolina Edlund; Emma Lundberg; Sanjay Navani; Cristina Al-Khalili Szigyarto; Jacob Odeberg; Dijana Djureinovic; Jenny Ottosson Takanen; Sophia Hober; Tove Alm; Per-Henrik Edqvist; Holger Berling; Hanna Tegel; Jan Mulder; Johan Rockberg; Peter Nilsson; Jochen M Schwenk; Marica Hamsten; Kalle von Feilitzen; Mattias Forsberg; Lukas Persson; Fredric Johansson; Martin Zwahlen; Gunnar von Heijne; Jens Nielsen; Fredrik Pontén
Journal:  Science       Date:  2015-01-23       Impact factor: 47.728

Review 5.  Freedom of expression: cell-type-specific gene profiling.

Authors:  Leo Otsuki; Seth W Cheetham; Andrea H Brand
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2014-08-29       Impact factor: 5.814

Review 6.  Laser capture microdissection: Big data from small samples.

Authors:  Soma Datta; Lavina Malhotra; Ryan Dickerson; Scott Chaffee; Chandan K Sen; Sashwati Roy
Journal:  Histol Histopathol       Date:  2015-04-20       Impact factor: 2.303

7.  Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.

Authors:  Lynn Marie Butler; Björn Mikael Hallström; Linn Fagerberg; Fredrik Pontén; Mathias Uhlén; Thomas Renné; Jacob Odeberg
Journal:  Cell Syst       Date:  2016-09-15       Impact factor: 10.304

8.  A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.

Authors:  Latarsha J Carithers; Kristin Ardlie; Mary Barcus; Philip A Branton; Angela Britton; Stephen A Buia; Carolyn C Compton; David S DeLuca; Joanne Peter-Demchok; Ellen T Gelfand; Ping Guan; Greg E Korzeniewski; Nicole C Lockhart; Chana A Rabiner; Abhi K Rao; Karna L Robinson; Nancy V Roche; Sherilyn J Sawyer; Ayellet V Segrè; Charles E Shive; Anna M Smith; Leslie H Sobin; Anita H Undale; Kimberly M Valentino; Jim Vaught; Taylor R Young; Helen M Moore
Journal:  Biopreserv Biobank       Date:  2015-10       Impact factor: 2.300

9.  Defining cell-type specificity at the transcriptional level in human disease.

Authors:  Wenjun Ju; Casey S Greene; Felix Eichinger; Viji Nair; Jeffrey B Hodgin; Markus Bitzer; Young-Suk Lee; Qian Zhu; Masami Kehata; Min Li; Song Jiang; Maria Pia Rastaldi; Clemens D Cohen; Olga G Troyanskaya; Matthias Kretzler
Journal:  Genome Res       Date:  2013-08-15       Impact factor: 9.043

10.  WGCNA: an R package for weighted correlation network analysis.

Authors:  Peter Langfelder; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2008-12-29       Impact factor: 3.169
  10 in total

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