Literature DB >> 25174322

Freedom of expression: cell-type-specific gene profiling.

Leo Otsuki1, Seth W Cheetham, Andrea H Brand.   

Abstract

Cell fate and behavior are results of differential gene regulation, making techniques to profile gene expression in specific cell types highly desirable. Many methods now enable investigation at the DNA, RNA and protein level. This review introduces the most recent and popular techniques, and discusses key issues influencing the choice between these such as ease, cost and applicability of information gained. Interdisciplinary collaborations will no doubt contribute further advances, including not just in single cell type but single-cell expression profiling.
© 2014 Wiley Periodicals, Inc.

Mesh:

Year:  2014        PMID: 25174322     DOI: 10.1002/wdev.149

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Dev Biol        ISSN: 1759-7684            Impact factor:   5.814


  6 in total

1.  Cell-type-specific profiling of protein-DNA interactions without cell isolation using targeted DamID with next-generation sequencing.

Authors:  Owen J Marshall; Tony D Southall; Seth W Cheetham; Andrea H Brand
Journal:  Nat Protoc       Date:  2016-08-04       Impact factor: 13.491

Review 2.  Getting Down to Specifics: Profiling Gene Expression and Protein-DNA Interactions in a Cell Type-Specific Manner.

Authors:  Colin D McClure; Tony D Southall
Journal:  Adv Genet       Date:  2015-07-23       Impact factor: 1.944

3.  Deconvolution of the Human Endothelial Transcriptome.

Authors:  Christoph D Rau; Chen Gao; Yibin Wang
Journal:  Cell Syst       Date:  2016-09-28       Impact factor: 10.304

Review 4.  DamID as a versatile tool for understanding gene regulation.

Authors:  Gabriel N Aughey; Seth W Cheetham; Tony D Southall
Journal:  Development       Date:  2019-03-15       Impact factor: 6.868

5.  Targeted DamID reveals differential binding of mammalian pluripotency factors.

Authors:  Seth W Cheetham; Wolfram H Gruhn; Jelle van den Ameele; Robert Krautz; Tony D Southall; Toshihiro Kobayashi; M Azim Surani; Andrea H Brand
Journal:  Development       Date:  2018-10-17       Impact factor: 6.868

6.  Trait Specific Expression Profiling of Salt Stress Responsive Genes in Diverse Rice Genotypes as Determined by Modified Significance Analysis of Microarrays.

Authors:  Mohammad R Hossain; George W Bassel; Jeremy Pritchard; Garima P Sharma; Brian V Ford-Lloyd
Journal:  Front Plant Sci       Date:  2016-05-03       Impact factor: 5.753

  6 in total

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