| Literature DB >> 27682095 |
Nicole A Vander Schaaf1, Anna M G Cunningham2, Brandon P Cluff3, CodyJo K Kraemer4, Chelsea L Reeves5, Carli J Riester6, Lauren K Slater7, Michael T Madigan8, W Matthew Sattley9.
Abstract
The permanently ice-covered lakes of the McMurdo Dry Valleys, Antarctica are distinctive ecosystems that consist strictly of microbial communities. In this study, water samples were collected from Lake Vanda, a stratified Dry Valley lake whose upper waters (from just below the ice cover to nearly 60 m) are highly oligotrophic, and used to establish enrichment cultures. Six strains of psychrotolerant, heterotrophic bacteria were isolated from lake water samples from a depth of 50 or 55 m. Phylogenetic analyses showed the Lake Vanda strains to be species of Nocardiaceae, Caulobacteraceae, Sphingomonadaceae, and Bradyrhizobiaceae. All Lake Vanda strains grew at temperatures near or below 0 °C, but optimal growth occurred from 18 to 24 °C. Some strains showed significant halotolerance, but no strains required NaCl for growth. The isolates described herein include cold-active species not previously reported from Dry Valley lakes, and their physiological and phylogenetic characterization broadens our understanding of these limnologically unique lakes.Entities:
Keywords: Antarctica; Lake Vanda; McMurdo Dry Valleys; halotolerant; psychrotolerant
Year: 2015 PMID: 27682095 PMCID: PMC5023249 DOI: 10.3390/microorganisms3030391
Source DB: PubMed Journal: Microorganisms ISSN: 2076-2607
Figure 1Physiochemical profile of the Lake Vanda water column. Due to the permanent ice cover on Lake Vanda, measurements begin at a depth of 5 m.
Summary of major properties of Lake Vanda bacteria isolated in this study a.
| Property | ||||
|---|---|---|---|---|
| Cell shape | Straight rod | Straight-to-curved rod | Straight rod, often tapered | Straight rod |
| Motility | − | + | − | + |
| Cell size (l × w, μm) | 2–5 × 1–1.2 | 1.4–3.2 × 0.7–0.8 | 1.5–3.5 × 0.9–1.1 | 1.8–8 × 0.9–1 |
| Gram stain reaction | + | − | − | − |
| Pigment | Bright yellow/Orange | None | Pink | Bright yellow |
| Temp. range (°C) | −2–32 | −2–35 | 2–29 | 0–30 |
| Temp. optimum (°C) | 18–24 | 20 | 20 | 20 |
| Salinity range (% NaCl) | 0–10 | 0–6 | 0–1 | 0–6 |
a Maneval’s staining showed that all strains were encapsulated. The KOH string test [42] was used to verify the Gram reactions of strains that showed ambiguous Gram stain results. Photomicrographs of all strains are shown in Figure 2 and Figure 3.
Figure 2Morphology and phylogeny of Rhodococcus strain BYV50. (A) Phase-contrast micrograph (left) and scanning electron micrograph (right) showing cell morphology and arrangement; (B) Phylogenetic tree generated from 1435 nucleotide positions of the 16S rRNA gene. Mycobacterium smegmatis is the outgroup organism, and bootstrap values >50% are shown at the branching points. GenBank accession numbers are listed in parentheses.
Figure 3Morphology and phylogeny of gram-negative Lake Vanda isolates. (A) Phase-contrast photomicrographs showing cell morphology and arrangement of each strain; (B) Phylogenetic tree generated from 1369 nucleotide positions of the 16S rRNA gene. Pseudomonas aeruginosa is the outgroup organism, and bootstrap values > 50% are shown at the branching points. GenBank accession numbers are listed in parentheses.
Carbon source utilization by Lake Vanda bacteria isolated in this study a.
| Carbon Source | ||||
|---|---|---|---|---|
| SUGARS | ||||
| Glucose | + | + | − | (+) |
| Fructose | ++ | (+) | − | − |
| Ribose | + | (+) | − | − |
| Galactose | + | + | − | (+) |
| Sucrose | ++ | − | − | (+) |
| Maltose | + | + | − | (+) |
| Lactose | + | (+) | − | (+) |
| Xylose | ++ | − | − | − |
| Mannose | + | (+) | − | − |
| ALCOHOLS | ||||
| Ethanol | + | + | − | (+) |
| Propanol | ++ | (+) | − | − |
| FATTY AND ORGANIC ACIDS | ||||
| Acetate | + | + | − | (+) |
| Pyruvate | + | + | + | (+) |
| Propionate | ++ | − | − | − |
| Butyrate | ++ | + | (+) | (+) |
| Lactate | ++ | + | + | − |
| Fumarate | + | + | − | − |
| Succinate | ++ | + | (+) | (+) |
| Benzoate | + | − | − | − |
| Yeast Extract | ++ | ++ | + | + |
a Growth was assessed as the difference of the time zero absorbance (OD540) from the final absorbance using the following scale: ++, ∆ OD540 > 0.15; +, ∆ OD540 0.051–0.150; (+), ∆ OD540 0.021–0.050; −, ∆ OD540 0–0.02. Carbon sources had the following final concentrations: yeast extract, 0.1%; benzoate, lactose, 3 mM; maltose, sucrose, fructose, glucose, galactose, butyrate, succinate, 5 mM; all others, 10 mM. No strains grew with malate or citrate (10 mM each) as sole carbon source, and only strain BYV50 was capable of degrading urea. All strains tested negative for tryptophanase, gelatinase, cysteine desulfurase, and starch hydrolysis.
Figure 4Growth response to temperature for Lake Vanda strain BYV50. (A) Growth of strain BYV50 over a range of temperatures in medium R2A containing 0.5% NaCl. Slow growth at −2 °C occurred, while no growth was observed at 35 °C; (B) Expression of growth rate data as percent maximum growth. Optical densities for triplicate cultures at each temperature were averaged following growth for seven days. The highest density was assigned a value of 100, and the percentage of maximum growth was calculated for each remaining temperature.