Literature DB >> 27676308

Gene Flow and Molecular Innovation in Bacteria.

Antonio C Ruzzini1, Jon Clardy2.   

Abstract

The small molecules produced by environmental bacteria have been mainstays of both chemical and biological research for decades, and some have led to important therapeutic interventions. These small molecules have been shaped by natural selection as they evolved to fulfill changing functional roles in their native environments. This minireview describes some recent systematic studies providing illustrative examples that involve the acquisition and alteration of genetic information for molecular innovation by bacteria in well-defined environments. Two different bacterial genera are featured, Pseudonocardia and Salinispora, and, although the small-molecule repertoires of both have benefited from horizontal gene transfer, Pseudonocardia spp. have relied on plasmid-based tactics while Salinispora spp. have relied on chromosomally integrated genomic islands.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27676308      PMCID: PMC5076561          DOI: 10.1016/j.cub.2016.08.004

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  42 in total

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Authors:  Tracy J Mincer; Paul R Jensen; Christopher A Kauffman; William Fenical
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Review 2.  A new biology for a new century.

Authors:  Carl R Woese
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

Review 3.  Genomic islands in pathogenic and environmental microorganisms.

Authors:  Ulrich Dobrindt; Bianca Hochhut; Ute Hentschel; Jörg Hacker
Journal:  Nat Rev Microbiol       Date:  2004-05       Impact factor: 60.633

4.  The discovery of salinosporamide K from the marine bacterium "Salinispora pacifica" by genome mining gives insight into pathway evolution.

Authors:  Alessandra S Eustáquio; Sang-Jip Nam; Kevin Penn; Anna Lechner; Micheal C Wilson; William Fenical; Paul R Jensen; Bradley S Moore
Journal:  Chembiochem       Date:  2011-01-03       Impact factor: 3.164

5.  Conservation of the pyrrolnitrin biosynthetic gene cluster among six pyrrolnitrin-producing strains.

Authors:  P E Hammer; W Burd; D S Hill; J M Ligon; K van Pée
Journal:  FEMS Microbiol Lett       Date:  1999-11-01       Impact factor: 2.742

Review 6.  Activity, distribution and function of indole-3-acetic acid biosynthetic pathways in bacteria.

Authors:  Cheryl L Patten; Andrew J C Blakney; Thomas J D Coulson
Journal:  Crit Rev Microbiol       Date:  2012-09-15       Impact factor: 7.624

Review 7.  Auxin and plant-microbe interactions.

Authors:  Stijn Spaepen; Jos Vanderleyden
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

8.  Natural combinatorial biosynthesis involving two clusters for the synthesis of three pyrrolamides in Streptomyces netropsis.

Authors:  Audrey Vingadassalon; Florence Lorieux; Maud Juguet; Géraldine Le Goff; Claude Gerbaud; Jean-Luc Pernodet; Sylvie Lautru
Journal:  ACS Chem Biol       Date:  2014-12-04       Impact factor: 5.100

9.  Dentigerumycin: a bacterial mediator of an ant-fungus symbiosis.

Authors:  Dong-Chan Oh; Michael Poulsen; Cameron R Currie; Jon Clardy
Journal:  Nat Chem Biol       Date:  2009-03-29       Impact factor: 15.040

10.  A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus.

Authors:  Jörg Barke; Ryan F Seipke; Sabine Grüschow; Darren Heavens; Nizar Drou; Mervyn J Bibb; Rebecca J M Goss; Douglas W Yu; Matthew I Hutchings
Journal:  BMC Biol       Date:  2010-08-26       Impact factor: 7.431

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  9 in total

1.  Diversity and distribution of the bmp gene cluster and its Polybrominated products in the genus Pseudoalteromonas.

Authors:  Julia Busch; Vinayak Agarwal; Michelle Schorn; Henrique Machado; Bradley S Moore; Greg W Rouse; Lone Gram; Paul R Jensen
Journal:  Environ Microbiol       Date:  2019-02-22       Impact factor: 5.491

2.  Meeting Proceedings, 2017 Cornell University Baker Symposium-Quo Vadis: The Boundless Trajectories of Chemical Biology.

Authors:  Jeremy M Baskin; Yimon Aye
Journal:  Biochemistry       Date:  2017-05-30       Impact factor: 3.162

3.  Quorum Sensing in a Methane-Oxidizing Bacterium.

Authors:  Aaron W Puri; Amy L Schaefer; Yanfen Fu; David A C Beck; E Peter Greenberg; Mary E Lidstrom
Journal:  J Bacteriol       Date:  2017-02-14       Impact factor: 3.490

4.  Biosynthetic gene clusters and the evolution of fungal chemodiversity.

Authors:  Antonis Rokas; Matthew E Mead; Jacob L Steenwyk; Huzefa A Raja; Nicholas H Oberlies
Journal:  Nat Prod Rep       Date:  2020-01-03       Impact factor: 13.423

5.  Constraints on lateral gene transfer in promoting fimbrial usher protein diversity and function.

Authors:  Christopher J Stubenrauch; Gordon Dougan; Trevor Lithgow; Eva Heinz
Journal:  Open Biol       Date:  2017-11       Impact factor: 6.411

6.  Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites.

Authors:  Alexander B Chase; Douglas Sweeney; Mitchell N Muskat; Dulce G Guillén-Matus; Paul R Jensen
Journal:  mBio       Date:  2021-11-23       Impact factor: 7.867

7.  Comparative Metagenomic Analysis of Biosynthetic Diversity across Sponge Microbiomes Highlights Metabolic Novelty, Conservation, and Diversification.

Authors:  Catarina Loureiro; Anastasia Galani; Asimenia Gavriilidou; Maryam Chaib de Mares; John van der Oost; Marnix H Medema; Detmer Sipkema
Journal:  mSystems       Date:  2022-07-18       Impact factor: 7.324

8.  A Novel Strategy for Detecting Recent Horizontal Gene Transfer and Its Application to Rhizobium Strains.

Authors:  Xiangchen Li; Wenjun Tong; Lina Wang; Siddiq Ur Rahman; Gehong Wei; Shiheng Tao
Journal:  Front Microbiol       Date:  2018-05-15       Impact factor: 5.640

9.  The Carbapenemase BKC-1 from Klebsiella pneumoniae Is Adapted for Translocation by Both the Tat and Sec Translocons.

Authors:  Manasa Bharathwaj; Chaille T Webb; Grishma Vadlamani; Christopher J Stubenrauch; Tracy Palmer; Trevor Lithgow
Journal:  mBio       Date:  2021-06-22       Impact factor: 7.867

  9 in total

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