Literature DB >> 31898704

Biosynthetic gene clusters and the evolution of fungal chemodiversity.

Antonis Rokas1, Matthew E Mead, Jacob L Steenwyk, Huzefa A Raja, Nicholas H Oberlies.   

Abstract

Covering: up to 2019Fungi produce a remarkable diversity of secondary metabolites: small, bioactive molecules not required for growth but which are essential to their ecological interactions with other organisms. Genes that participate in the same secondary metabolic pathway typically reside next to each other in fungal genomes and form biosynthetic gene clusters (BGCs). By synthesizing state-of-the-art knowledge on the evolution of BGCs in fungi, we propose that fungal chemodiversity stems from three molecular evolutionary processes involving BGCs: functional divergence, horizontal transfer, and de novo assembly. We provide examples of how these processes have contributed to the generation of fungal chemodiversity, discuss their relative importance, and outline major, outstanding questions in the field.

Entities:  

Year:  2020        PMID: 31898704      PMCID: PMC7332410          DOI: 10.1039/c9np00045c

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  75 in total

1.  The evolution of gene collectives: How natural selection drives chemical innovation.

Authors:  Michael A Fischbach; Christopher T Walsh; Jon Clardy
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

2.  Repeated loss of an anciently horizontally transferred gene cluster in Botrytis.

Authors:  Matthew A Campbell; Martijn Staats; Jan A L van Kan; Antonis Rokas; Jason C Slot
Journal:  Mycologia       Date:  2013-08-06       Impact factor: 2.696

Review 3.  Fungal secondary metabolism: regulation, function and drug discovery.

Authors:  Nancy P Keller
Journal:  Nat Rev Microbiol       Date:  2019-03       Impact factor: 60.633

Review 4.  Defense contracts: molecular protection in insect-microbe symbioses.

Authors:  Ethan B Van Arnam; Cameron R Currie; Jon Clardy
Journal:  Chem Soc Rev       Date:  2018-03-05       Impact factor: 54.564

5.  Minimum Information about a Biosynthetic Gene cluster.

Authors:  Marnix H Medema; Renzo Kottmann; Pelin Yilmaz; Matthew Cummings; John B Biggins; Kai Blin; Irene de Bruijn; Yit Heng Chooi; Jan Claesen; R Cameron Coates; Pablo Cruz-Morales; Srikanth Duddela; Stephanie Düsterhus; Daniel J Edwards; David P Fewer; Neha Garg; Christoph Geiger; Juan Pablo Gomez-Escribano; Anja Greule; Michalis Hadjithomas; Anthony S Haines; Eric J N Helfrich; Matthew L Hillwig; Keishi Ishida; Adam C Jones; Carla S Jones; Katrin Jungmann; Carsten Kegler; Hyun Uk Kim; Peter Kötter; Daniel Krug; Joleen Masschelein; Alexey V Melnik; Simone M Mantovani; Emily A Monroe; Marcus Moore; Nathan Moss; Hans-Wilhelm Nützmann; Guohui Pan; Amrita Pati; Daniel Petras; F Jerry Reen; Federico Rosconi; Zhe Rui; Zhenhua Tian; Nicholas J Tobias; Yuta Tsunematsu; Philipp Wiemann; Elizabeth Wyckoff; Xiaohui Yan; Grace Yim; Fengan Yu; Yunchang Xie; Bertrand Aigle; Alexander K Apel; Carl J Balibar; Emily P Balskus; Francisco Barona-Gómez; Andreas Bechthold; Helge B Bode; Rainer Borriss; Sean F Brady; Axel A Brakhage; Patrick Caffrey; Yi-Qiang Cheng; Jon Clardy; Russell J Cox; René De Mot; Stefano Donadio; Mohamed S Donia; Wilfred A van der Donk; Pieter C Dorrestein; Sean Doyle; Arnold J M Driessen; Monika Ehling-Schulz; Karl-Dieter Entian; Michael A Fischbach; Lena Gerwick; William H Gerwick; Harald Gross; Bertolt Gust; Christian Hertweck; Monica Höfte; Susan E Jensen; Jianhua Ju; Leonard Katz; Leonard Kaysser; Jonathan L Klassen; Nancy P Keller; Jan Kormanec; Oscar P Kuipers; Tomohisa Kuzuyama; Nikos C Kyrpides; Hyung-Jin Kwon; Sylvie Lautru; Rob Lavigne; Chia Y Lee; Bai Linquan; Xinyu Liu; Wen Liu; Andriy Luzhetskyy; Taifo Mahmud; Yvonne Mast; Carmen Méndez; Mikko Metsä-Ketelä; Jason Micklefield; Douglas A Mitchell; Bradley S Moore; Leonilde M Moreira; Rolf Müller; Brett A Neilan; Markus Nett; Jens Nielsen; Fergal O'Gara; Hideaki Oikawa; Anne Osbourn; Marcia S Osburne; Bohdan Ostash; Shelley M Payne; Jean-Luc Pernodet; Miroslav Petricek; Jörn Piel; Olivier Ploux; Jos M Raaijmakers; José A Salas; Esther K Schmitt; Barry Scott; Ryan F Seipke; Ben Shen; David H Sherman; Kaarina Sivonen; Michael J Smanski; Margherita Sosio; Evi Stegmann; Roderich D Süssmuth; Kapil Tahlan; Christopher M Thomas; Yi Tang; Andrew W Truman; Muriel Viaud; Jonathan D Walton; Christopher T Walsh; Tilmann Weber; Gilles P van Wezel; Barrie Wilkinson; Joanne M Willey; Wolfgang Wohlleben; Gerard D Wright; Nadine Ziemert; Changsheng Zhang; Sergey B Zotchev; Rainer Breitling; Eriko Takano; Frank Oliver Glöckner
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

6.  Evolutionary Origins of the Fumonisin Secondary Metabolite Gene Cluster in Fusarium verticillioides and Aspergillus niger.

Authors:  Nora Khaldi; Kenneth H Wolfe
Journal:  Int J Evol Biol       Date:  2011-05-23

Review 7.  Genetics, genomics and evolution of ergot alkaloid diversity.

Authors:  Carolyn A Young; Christopher L Schardl; Daniel G Panaccione; Simona Florea; Johanna E Takach; Nikki D Charlton; Neil Moore; Jennifer S Webb; Jolanta Jaromczyk
Journal:  Toxins (Basel)       Date:  2015-04-14       Impact factor: 4.546

8.  Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.

Authors:  Tammi C Vesth; Jane L Nybo; Sebastian Theobald; Jens C Frisvad; Thomas O Larsen; Kristian F Nielsen; Jakob B Hoof; Julian Brandl; Asaf Salamov; Robert Riley; John M Gladden; Pallavi Phatale; Morten T Nielsen; Ellen K Lyhne; Martin E Kogle; Kimchi Strasser; Erin McDonnell; Kerrie Barry; Alicia Clum; Cindy Chen; Kurt LaButti; Sajeet Haridas; Matt Nolan; Laura Sandor; Alan Kuo; Anna Lipzen; Matthieu Hainaut; Elodie Drula; Adrian Tsang; Jon K Magnuson; Bernard Henrissat; Ad Wiebenga; Blake A Simmons; Miia R Mäkelä; Ronald P de Vries; Igor V Grigoriev; Uffe H Mortensen; Scott E Baker; Mikael R Andersen
Journal:  Nat Genet       Date:  2018-10-22       Impact factor: 38.330

Review 9.  Current understanding on aflatoxin biosynthesis and future perspective in reducing aflatoxin contamination.

Authors:  Jiujiang Yu
Journal:  Toxins (Basel)       Date:  2012-10-25       Impact factor: 4.546

10.  Distinct Trajectories of Massive Recent Gene Gains and Losses in Populations of a Microbial Eukaryotic Pathogen.

Authors:  Fanny E Hartmann; Daniel Croll
Journal:  Mol Biol Evol       Date:  2017-11-01       Impact factor: 16.240

View more
  18 in total

1.  Variation Among Biosynthetic Gene Clusters, Secondary Metabolite Profiles, and Cards of Virulence Across Aspergillus Species.

Authors:  Matthew E Mead; Sonja L Knowles; Jacob L Steenwyk; Huzefa A Raja; Christopher D Roberts; Oliver Bader; Jos Houbraken; Gustavo H Goldman; Nicholas H Oberlies; Antonis Rokas
Journal:  Genetics       Date:  2020-08-17       Impact factor: 4.562

Review 2.  The Small GTPases in Fungal Signaling Conservation and Function.

Authors:  Mitzuko Dautt-Castro; Montserrat Rosendo-Vargas; Sergio Casas-Flores
Journal:  Cells       Date:  2021-04-28       Impact factor: 6.600

3.  The Evolution of the Satratoxin and Atranone Gene Clusters of Stachybotrys chartarum.

Authors:  Sebastian Ulrich; Katharina Lang; Ludwig Niessen; Christiane Baschien; Robert Kosicki; Magdalena Twarużek; Reinhard K Straubinger; Frank Ebel
Journal:  J Fungi (Basel)       Date:  2022-03-24

4.  Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus.

Authors:  Javier F Tabima; Ian A Trautman; Ying Chang; Yan Wang; Stephen Mondo; Alan Kuo; Asaf Salamov; Igor V Grigoriev; Jason E Stajich; Joseph W Spatafora
Journal:  G3 (Bethesda)       Date:  2020-09-02       Impact factor: 3.154

5.  Vertical Inheritance Facilitates Interspecies Diversification in Biosynthetic Gene Clusters and Specialized Metabolites.

Authors:  Alexander B Chase; Douglas Sweeney; Mitchell N Muskat; Dulce G Guillén-Matus; Paul R Jensen
Journal:  mBio       Date:  2021-11-23       Impact factor: 7.867

6.  Assessing Biosynthetic Gene Cluster Diversity of Specialized Metabolites in the Conserved Gut Symbionts of Herbivorous Turtle Ants.

Authors:  Anaïs Chanson; Corrie S Moreau; Christophe Duplais
Journal:  Front Microbiol       Date:  2021-06-29       Impact factor: 5.640

7.  Wheldone: Characterization of a Unique Scaffold from the Coculture of Aspergillus fischeri and Xylaria flabelliformis.

Authors:  Sonja L Knowles; Huzefa A Raja; Israa H Isawi; Laura Flores-Bocanegra; Patricia H Reggio; Cedric J Pearce; Joanna E Burdette; Antonis Rokas; Nicholas H Oberlies
Journal:  Org Lett       Date:  2020-02-25       Impact factor: 6.005

8.  The Untapped Australasian Diversity of Astaxanthin-Producing Yeasts with Biotechnological Potential-Phaffia australis sp. nov. and Phaffia tasmanica sp. nov.

Authors:  Márcia David-Palma; Diego Libkind; Patrícia H Brito; Margarida Silva; Nicolás Bellora; Marco A Coelho; Joseph Heitman; Paula Gonçalves; José Paulo Sampaio
Journal:  Microorganisms       Date:  2020-10-24

9.  Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.

Authors:  Snorre Sulheim; Fredrik A Fossheim; Alexander Wentzel; Eivind Almaas
Journal:  BMC Bioinformatics       Date:  2021-02-23       Impact factor: 3.169

Review 10.  Extremophilic Fungi from Marine Environments: Underexplored Sources of Antitumor, Anti-Infective and Other Biologically Active Agents.

Authors:  Lesley-Ann Giddings; David J Newman
Journal:  Mar Drugs       Date:  2022-01-10       Impact factor: 5.118

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.