Literature DB >> 27669419

Thermal profiling reveals phenylalanine hydroxylase as an off-target of panobinostat.

Isabelle Becher1,2, Thilo Werner1, Carola Doce1, Esther A Zaal3, Ina Tögel1, Crystal A Khan4, Anne Rueger1, Marcel Muelbaier1, Elsa Salzer1, Celia R Berkers3, Paul F Fitzpatrick4, Marcus Bantscheff1, Mikhail M Savitski1,2.   

Abstract

We describe a two-dimensional thermal proteome profiling strategy that can be combined with an orthogonal chemoproteomics approach to enable comprehensive target profiling of the marketed histone deacetylase inhibitor panobinostat. The N-hydroxycinnamide moiety is identified as critical for potent and tetrahydrobiopterin-competitive inhibition of phenylalanine hydroxylase leading to increases in phenylalanine and decreases in tyrosine levels. These findings provide a rationale for adverse clinical observations and suggest repurposing of the drug for treatment of tyrosinemia.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27669419     DOI: 10.1038/nchembio.2185

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  29 in total

1.  Thermal proteome profiling for unbiased identification of direct and indirect drug targets using multiplexed quantitative mass spectrometry.

Authors:  Holger Franken; Toby Mathieson; Dorothee Childs; Gavain M A Sweetman; Thilo Werner; Ina Tögel; Carola Doce; Stephan Gade; Marcus Bantscheff; Gerard Drewes; Friedrich B M Reinhard; Wolfgang Huber; Mikhail M Savitski
Journal:  Nat Protoc       Date:  2015-09-17       Impact factor: 13.491

2.  Measuring and managing ratio compression for accurate iTRAQ/TMT quantification.

Authors:  Mikhail M Savitski; Toby Mathieson; Nico Zinn; Gavain Sweetman; Carola Doce; Isabelle Becher; Fiona Pachl; Bernhard Kuster; Marcus Bantscheff
Journal:  J Proteome Res       Date:  2013-07-02       Impact factor: 4.466

3.  Monitoring drug target engagement in cells and tissues using the cellular thermal shift assay.

Authors:  Daniel Martinez Molina; Rozbeh Jafari; Marina Ignatushchenko; Takahiro Seki; E Andreas Larsson; Chen Dan; Lekshmy Sreekumar; Yihai Cao; Pär Nordlund
Journal:  Science       Date:  2013-07-05       Impact factor: 47.728

4.  Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes.

Authors:  Marcus Bantscheff; Carsten Hopf; Mikhail M Savitski; Antje Dittmann; Paola Grandi; Anne-Marie Michon; Judith Schlegl; Yann Abraham; Isabelle Becher; Giovanna Bergamini; Markus Boesche; Manja Delling; Birgit Dümpelfeld; Dirk Eberhard; Carola Huthmacher; Toby Mathieson; Daniel Poeckel; Valérie Reader; Katja Strunk; Gavain Sweetman; Ulrich Kruse; Gitte Neubauer; Nigel G Ramsden; Gerard Drewes
Journal:  Nat Biotechnol       Date:  2011-01-23       Impact factor: 54.908

5.  Panobinostat in patients with relapsed/refractory Hodgkin's lymphoma after autologous stem-cell transplantation: results of a phase II study.

Authors:  Anas Younes; Anna Sureda; Dina Ben-Yehuda; Pier Luigi Zinzani; Tee-Chuan Ong; H Miles Prince; Simon J Harrison; Mark Kirschbaum; Patrick Johnston; Jennifer Gallagher; Christophe Le Corre; Angela Shen; Andreas Engert
Journal:  J Clin Oncol       Date:  2012-04-30       Impact factor: 44.544

6.  A human protein atlas for normal and cancer tissues based on antibody proteomics.

Authors:  Mathias Uhlén; Erik Björling; Charlotta Agaton; Cristina Al-Khalili Szigyarto; Bahram Amini; Elisabet Andersen; Ann-Catrin Andersson; Pia Angelidou; Anna Asplund; Caroline Asplund; Lisa Berglund; Kristina Bergström; Harry Brumer; Dijana Cerjan; Marica Ekström; Adila Elobeid; Cecilia Eriksson; Linn Fagerberg; Ronny Falk; Jenny Fall; Mattias Forsberg; Marcus Gry Björklund; Kristoffer Gumbel; Asif Halimi; Inga Hallin; Carl Hamsten; Marianne Hansson; My Hedhammar; Görel Hercules; Caroline Kampf; Karin Larsson; Mats Lindskog; Wald Lodewyckx; Jan Lund; Joakim Lundeberg; Kristina Magnusson; Erik Malm; Peter Nilsson; Jenny Odling; Per Oksvold; Ingmarie Olsson; Emma Oster; Jenny Ottosson; Linda Paavilainen; Anja Persson; Rebecca Rimini; Johan Rockberg; Marcus Runeson; Asa Sivertsson; Anna Sköllermo; Johanna Steen; Maria Stenvall; Fredrik Sterky; Sara Strömberg; Mårten Sundberg; Hanna Tegel; Samuel Tourle; Eva Wahlund; Annelie Waldén; Jinghong Wan; Henrik Wernérus; Joakim Westberg; Kenneth Wester; Ulla Wrethagen; Lan Lan Xu; Sophia Hober; Fredrik Pontén
Journal:  Mol Cell Proteomics       Date:  2005-08-27       Impact factor: 5.911

7.  Activation of phenylalanine hydroxylase by phenylalanine does not require binding in the active site.

Authors:  Kenneth M Roberts; Crystal A Khan; Cynthia S Hinck; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2014-12-02       Impact factor: 3.162

8.  The Amino Acid Specificity for Activation of Phenylalanine Hydroxylase Matches the Specificity for Stabilization of Regulatory Domain Dimers.

Authors:  Shengnan Zhang; Andrew P Hinck; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2015-08-13       Impact factor: 3.162

9.  Target engagement and drug residence time can be observed in living cells with BRET.

Authors:  Matthew B Robers; Melanie L Dart; Carolyn C Woodroofe; Chad A Zimprich; Thomas A Kirkland; Thomas Machleidt; Kevin R Kupcho; Sergiy Levin; James R Hartnett; Kristopher Zimmerman; Andrew L Niles; Rachel Friedman Ohana; Danette L Daniels; Michael Slater; Monika G Wood; Mei Cong; Yi-Qiang Cheng; Keith V Wood
Journal:  Nat Commun       Date:  2015-12-03       Impact factor: 14.919

10.  Proteome-wide drug and metabolite interaction mapping by thermal-stability profiling.

Authors:  Kilian V M Huber; Karin M Olek; André C Müller; Chris Soon Heng Tan; Keiryn L Bennett; Jacques Colinge; Giulio Superti-Furga
Journal:  Nat Methods       Date:  2015-09-21       Impact factor: 28.547

View more
  50 in total

Review 1.  Plant Chemical Genetics: From Phenotype-Based Screens to Synthetic Biology.

Authors:  Wim Dejonghe; Eugenia Russinova
Journal:  Plant Physiol       Date:  2017-03-08       Impact factor: 8.340

2.  Impact of Mass Spectrometry-Based Technologies and Strategies on Chemoproteomics as a Tool for Drug Discovery.

Authors:  Ryan A McClure; Jon D Williams
Journal:  ACS Med Chem Lett       Date:  2018-07-03       Impact factor: 4.345

3.  A Dual-Mechanism Antibiotic Kills Gram-Negative Bacteria and Avoids Drug Resistance.

Authors:  James K Martin; Joseph P Sheehan; Benjamin P Bratton; Gabriel M Moore; André Mateus; Sophia Hsin-Jung Li; Hahn Kim; Joshua D Rabinowitz; Athanasios Typas; Mikhail M Savitski; Maxwell Z Wilson; Zemer Gitai
Journal:  Cell       Date:  2020-06-03       Impact factor: 41.582

4.  Mutant thermal proteome profiling for characterization of missense protein variants and their associated phenotypes within the proteome.

Authors:  Sarah A Peck Justice; Monica P Barron; Guihong D Qi; H R Sagara Wijeratne; José F Victorino; Ed R Simpson; Jonah Z Vilseck; Aruna B Wijeratne; Amber L Mosley
Journal:  J Biol Chem       Date:  2020-09-02       Impact factor: 5.157

5.  Posttranslational Modifications Drive Protein Stability to Control the Dynamic Beer Brewing Proteome.

Authors:  Edward D Kerr; Christopher H Caboche; Benjamin L Schulz
Journal:  Mol Cell Proteomics       Date:  2019-06-11       Impact factor: 5.911

6.  Prediction of intracellular exposure bridges the gap between target- and cell-based drug discovery.

Authors:  André Mateus; Laurie J Gordon; Gareth J Wayne; Helena Almqvist; Hanna Axelsson; Brinton Seashore-Ludlow; Andrea Treyer; Pär Matsson; Thomas Lundbäck; Andy West; Michael M Hann; Per Artursson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-12       Impact factor: 11.205

7.  Importance of Quantifying Drug-Target Engagement in Cells.

Authors:  Jakub Stefaniak; Kilian V M Huber
Journal:  ACS Med Chem Lett       Date:  2020-03-06       Impact factor: 4.345

8.  Comparative Analysis of Mass-Spectrometry-Based Proteomic Methods for Protein Target Discovery Using a One-Pot Approach.

Authors:  Aurora Cabrera; Nancy Wiebelhaus; Baiyi Quan; Renze Ma; He Meng; Michael C Fitzgerald
Journal:  J Am Soc Mass Spectrom       Date:  2019-11-22       Impact factor: 3.109

9.  Meltome atlas-thermal proteome stability across the tree of life.

Authors:  Anna Jarzab; Nils Kurzawa; Thomas Hopf; Matthias Moerch; Jana Zecha; Niels Leijten; Yangyang Bian; Eva Musiol; Melanie Maschberger; Gabriele Stoehr; Isabelle Becher; Charlotte Daly; Patroklos Samaras; Julia Mergner; Britta Spanier; Angel Angelov; Thilo Werner; Marcus Bantscheff; Mathias Wilhelm; Martin Klingenspor; Simone Lemeer; Wolfgang Liebl; Hannes Hahne; Mikhail M Savitski; Bernhard Kuster
Journal:  Nat Methods       Date:  2020-04-13       Impact factor: 28.547

10.  Selective targeting of BD1 and BD2 of the BET proteins in cancer and immunoinflammation.

Authors:  Omer Gilan; Inmaculada Rioja; Rab K Prinjha; Mark A Dawson; Kathy Knezevic; Matthew J Bell; Miriam M Yeung; Nicola R Harker; Enid Y N Lam; Chun-Wa Chung; Paul Bamborough; Massimo Petretich; Marjeta Urh; Stephen J Atkinson; Anna K Bassil; Emma J Roberts; Dane Vassiliadis; Marian L Burr; Alex G S Preston; Christopher Wellaway; Thilo Werner; James R Gray; Anne-Marie Michon; Thomas Gobbetti; Vinod Kumar; Peter E Soden; Andrea Haynes; Johanna Vappiani; David F Tough; Simon Taylor; Sarah-Jane Dawson; Marcus Bantscheff; Matthew Lindon; Gerard Drewes; Emmanuel H Demont; Danette L Daniels; Paola Grandi
Journal:  Science       Date:  2020-03-19       Impact factor: 47.728

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.