Literature DB >> 32292539

Importance of Quantifying Drug-Target Engagement in Cells.

Jakub Stefaniak1,2,3, Kilian V M Huber1,2.   

Abstract

Measuring and quantifying the binding of a drug to a protein target inside living cells and thereby correlating biochemical or biophysical activity with target engagement in cells or tissue represents a key step in target validation and drug development. A prototypic target engagement assay should allow for unbiased determination of small molecule-protein interactions in order to confirm cellular mechanism-of-action (MoA) while avoiding major artificial perturbations of cellular homeostasis and integrity. Recently, several new additions to the chemical biology toolbox have expanded our ability to study drug action in intact cells and enabled surveying of intracellular residence time and binding kinetics, which are particularly important for potent receptor ligands and therapeutic moieties with limited therapeutic index.
Copyright © 2020 American Chemical Society.

Year:  2020        PMID: 32292539      PMCID: PMC7153009          DOI: 10.1021/acsmedchemlett.9b00570

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  19 in total

1.  Activity-based protein profiling reveals off-target proteins of the FAAH inhibitor BIA 10-2474.

Authors:  Annelot C M van Esbroeck; Antonius P A Janssen; Armand B Cognetta; Daisuke Ogasawara; Guy Shpak; Mark van der Kroeg; Vasudev Kantae; Marc P Baggelaar; Femke M S de Vrij; Hui Deng; Marco Allarà; Filomena Fezza; Zhanmin Lin; Tom van der Wel; Marjolein Soethoudt; Elliot D Mock; Hans den Dulk; Ilse L Baak; Bogdan I Florea; Giel Hendriks; Luciano De Petrocellis; Herman S Overkleeft; Thomas Hankemeier; Chris I De Zeeuw; Vincenzo Di Marzo; Mauro Maccarrone; Benjamin F Cravatt; Steven A Kushner; Mario van der Stelt
Journal:  Science       Date:  2017-06-09       Impact factor: 47.728

Review 2.  Lessons learned from the fate of AstraZeneca's drug pipeline: a five-dimensional framework.

Authors:  David Cook; Dearg Brown; Robert Alexander; Ruth March; Paul Morgan; Gemma Satterthwaite; Menelas N Pangalos
Journal:  Nat Rev Drug Discov       Date:  2014-05-16       Impact factor: 84.694

3.  Tracking cancer drugs in living cells by thermal profiling of the proteome.

Authors:  Mikhail M Savitski; Friedrich B M Reinhard; Holger Franken; Thilo Werner; Maria Fälth Savitski; Dirk Eberhard; Daniel Martinez Molina; Rozbeh Jafari; Rebecca Bakszt Dovega; Susan Klaeger; Bernhard Kuster; Pär Nordlund; Marcus Bantscheff; Gerard Drewes
Journal:  Science       Date:  2014-10-02       Impact factor: 47.728

4.  Thermal profiling reveals phenylalanine hydroxylase as an off-target of panobinostat.

Authors:  Isabelle Becher; Thilo Werner; Carola Doce; Esther A Zaal; Ina Tögel; Crystal A Khan; Anne Rueger; Marcel Muelbaier; Elsa Salzer; Celia R Berkers; Paul F Fitzpatrick; Marcus Bantscheff; Mikhail M Savitski
Journal:  Nat Chem Biol       Date:  2016-09-26       Impact factor: 15.040

5.  In vivo imaging of specific drug-target binding at subcellular resolution.

Authors:  J M Dubach; C Vinegoni; R Mazitschek; P Fumene Feruglio; L A Cameron; R Weissleder
Journal:  Nat Commun       Date:  2014-05-28       Impact factor: 14.919

6.  Discovery and Optimization of Selective and in Vivo Active Inhibitors of the Lysophosphatidylserine Lipase α/β-Hydrolase Domain-Containing 12 (ABHD12).

Authors:  Daisuke Ogasawara; Taka-Aki Ichu; Hui Jing; Jonathan J Hulce; Alex Reed; Olesya A Ulanovskaya; Benjamin F Cravatt
Journal:  J Med Chem       Date:  2019-02-05       Impact factor: 7.446

7.  A High-Throughput Dose-Response Cellular Thermal Shift Assay for Rapid Screening of Drug Target Engagement in Living Cells, Exemplified Using SMYD3 and IDO1.

Authors:  Dean E McNulty; William G Bonnette; Hongwei Qi; Liping Wang; Thau F Ho; Anna Waszkiewicz; Lorena A Kallal; Raman P Nagarajan; Melissa Stern; Amy M Quinn; Caretha L Creasy; Dai-Shi Su; Alan P Graves; Roland S Annan; Sharon M Sweitzer; Marc A Holbert
Journal:  SLAS Discov       Date:  2017-09-28       Impact factor: 3.341

8.  Quantitative, Wide-Spectrum Kinase Profiling in Live Cells for Assessing the Effect of Cellular ATP on Target Engagement.

Authors:  James D Vasta; Cesear R Corona; Jennifer Wilkinson; Chad A Zimprich; James R Hartnett; Morgan R Ingold; Kristopher Zimmerman; Thomas Machleidt; Thomas A Kirkland; Kristin G Huwiler; Rachel Friedman Ohana; Michael Slater; Paul Otto; Mei Cong; Carrow I Wells; Benedict-Tilman Berger; Thomas Hanke; Carina Glas; Ke Ding; David H Drewry; Kilian V M Huber; Timothy M Willson; Stefan Knapp; Susanne Müller; Poncho L Meisenheimer; Frank Fan; Keith V Wood; Matthew B Robers
Journal:  Cell Chem Biol       Date:  2017-11-22       Impact factor: 8.116

9.  Proteome-wide drug and metabolite interaction mapping by thermal-stability profiling.

Authors:  Kilian V M Huber; Karin M Olek; André C Müller; Chris Soon Heng Tan; Keiryn L Bennett; Jacques Colinge; Giulio Superti-Furga
Journal:  Nat Methods       Date:  2015-09-21       Impact factor: 28.547

10.  Demonstrating In-Cell Target Engagement Using a Pirin Protein Degradation Probe (CCT367766).

Authors:  Nicola E A Chessum; Swee Y Sharp; John J Caldwell; A Elisa Pasqua; Birgit Wilding; Giampiero Colombano; Ian Collins; Bugra Ozer; Meirion Richards; Martin Rowlands; Mark Stubbs; Rosemary Burke; P Craig McAndrew; Paul A Clarke; Paul Workman; Matthew D Cheeseman; Keith Jones
Journal:  J Med Chem       Date:  2018-01-05       Impact factor: 7.446

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  7 in total

1.  Nuclear Receptor Chemical Reporter Enables Domain-Specific Analysis of Ligands in Mammalian Cells.

Authors:  Taku Tsukidate; Qiang Li; Howard C Hang
Journal:  ACS Chem Biol       Date:  2020-09-10       Impact factor: 5.100

2.  Comparison of Cellular Target Engagement Methods for the Tubulin Deacetylases Sirt2 and HDAC6: NanoBRET, CETSA, Tubulin Acetylation, and PROTACs.

Authors:  Anja Vogelmann; Manfred Jung; Finn K Hansen; Matthias Schiedel
Journal:  ACS Pharmacol Transl Sci       Date:  2022-01-27

3.  Designing a Small Fluorescent Inhibitor to Investigate Soluble Epoxide Hydrolase Engagement in Living Cells.

Authors:  Steffen Brunst; Julia Schönfeld; Peter Breunig; Luisa D Burgers; Murphy DeMeglio; Johanna H M Ehrler; Felix F Lillich; Lilia Weizel; Jasmin K Hefendehl; Robert Fürst; Ewgenij Proschak; Kerstin Hiesinger
Journal:  ACS Med Chem Lett       Date:  2022-06-14       Impact factor: 4.632

Review 4.  Reactivity-based chemical-genetic study of protein kinases.

Authors:  Renata Rezende Miranda; Chao Zhang
Journal:  RSC Med Chem       Date:  2022-03-30

5.  Rapid Evaluation of Small Molecule Cellular Target Engagement with a Luminescent Thermal Shift Assay.

Authors:  Jonathan D Mortison; Ivan Cornella-Taracido; Gireedhar Venkatchalam; Anthony W Partridge; Nirodhini Siriwardana; Simon M Bushell
Journal:  ACS Med Chem Lett       Date:  2021-07-12       Impact factor: 4.632

6.  Application of a Fluorescence Anisotropy-Based Assay to Quantify Transglutaminase 2 Activity in Cell Lysates.

Authors:  Sandra Hauser; Paul Sommerfeld; Johanna Wodtke; Christoph Hauser; Paul Schlitterlau; Jens Pietzsch; Reik Löser; Markus Pietsch; Robert Wodtke
Journal:  Int J Mol Sci       Date:  2022-04-19       Impact factor: 6.208

7.  Neurocircuitry of treatment in anxiety disorders.

Authors:  W Tommy Baumel; Lu Lu; Xiaoqi Huang; Andrew T Drysdale; John A Sweeny; Qiyong Gong; Chad M Sylvester; Jeffrey R Strawn
Journal:  Biomark Neuropsychiatry       Date:  2022-04-22
  7 in total

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