Literature DB >> 27648972

Growth rate controls mRNA turnover in steady and non-steady states.

José García-Martínez1, Kevin Troulé2, Sebastián Chávez3, José E Pérez-Ortín2.   

Abstract

Gene expression has been investigated in relation with growth rate in the yeast Saccharomyces cerevisiae, following different experimental strategies. The expression of some specific gene functional categories increases or decreases with growth rate. Our recently published results have unveiled that these changes in mRNA concentration with growth depend on the relative alteration of mRNA synthesis and decay, and that, in addition to this gene-specific transcriptomic signature of growth, global mRNA turnover increases with growth rate. We discuss here these results in relation with other previous and concurrent publications, and we add new evidence which indicates that growth rate controls mRNA turnover even under non-steady-state conditions.

Entities:  

Keywords:  Gene expression; Saccharomyces cerevisiae; growth rate; mRNA stability; transcription; yeast

Mesh:

Substances:

Year:  2016        PMID: 27648972      PMCID: PMC5207384          DOI: 10.1080/15476286.2016.1236171

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  33 in total

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Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

Review 5.  The importance of controlling mRNA turnover during cell proliferation.

Authors:  Sebastián Chávez; José García-Martínez; Lidia Delgado-Ramos; José E Pérez-Ortín
Journal:  Curr Genet       Date:  2016-03-23       Impact factor: 3.886

6.  There is a steady-state transcriptome in exponentially growing yeast cells.

Authors:  Vicent Pelechano; José E Pérez-Ortín
Journal:  Yeast       Date:  2010-07       Impact factor: 3.239

7.  The mRNA cap-binding protein Cbc1 is required for high and timely expression of genes by promoting the accumulation of gene-specific activators at promoters.

Authors:  Tianlu Li; Nikki De Clercq; Daniel A Medina; Elena Garre; Per Sunnerhagen; José E Pérez-Ortín; Paula Alepuz
Journal:  Biochim Biophys Acta       Date:  2016-01-13

8.  Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae.

Authors:  Lorena Romero-Santacreu; Joaquín Moreno; José E Pérez-Ortín; Paula Alepuz
Journal:  RNA       Date:  2009-04-15       Impact factor: 4.942

9.  Predicting cellular growth from gene expression signatures.

Authors:  Edoardo M Airoldi; Curtis Huttenhower; David Gresham; Charles Lu; Amy A Caudy; Maitreya J Dunham; James R Broach; David Botstein; Olga G Troyanskaya
Journal:  PLoS Comput Biol       Date:  2009-01-02       Impact factor: 4.475

10.  Differential Stoichiometry among Core Ribosomal Proteins.

Authors:  Nikolai Slavov; Stefan Semrau; Edoardo Airoldi; Bogdan Budnik; Alexander van Oudenaarden
Journal:  Cell Rep       Date:  2015-10-22       Impact factor: 9.423

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  8 in total

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2.  Asymmetric cell division requires specific mechanisms for adjusting global transcription.

Authors:  Adriana Mena; Daniel A Medina; José García-Martínez; Victoria Begley; Abhyudai Singh; Sebastián Chávez; Mari C Muñoz-Centeno; José E Pérez-Ortín
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

3.  A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export.

Authors:  Paula Oliete-Calvo; Joan Serrano-Quílez; Carme Nuño-Cabanes; María E Pérez-Martínez; Luis M Soares; Bernhard Dichtl; Stephen Buratowski; José E Pérez-Ortín; Susana Rodríguez-Navarro
Journal:  EMBO Rep       Date:  2018-09-24       Impact factor: 8.807

4.  Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration.

Authors:  Victoria Begley; Antonio Jordán-Pla; Xenia Peñate; Ana I Garrido-Godino; Drice Challal; Abel Cuevas-Bermúdez; Adrià Mitjavila; Mara Barucco; Gabriel Gutiérrez; Abhyudai Singh; Paula Alepuz; Francisco Navarro; Domenico Libri; José E Pérez-Ortín; Sebastián Chávez
Journal:  RNA Biol       Date:  2020-12-01       Impact factor: 4.652

5.  Promoter architecture determines cotranslational regulation of mRNA.

Authors:  Lorena Espinar; Miquel Àngel Schikora Tamarit; Júlia Domingo; Lucas B Carey
Journal:  Genome Res       Date:  2018-03-22       Impact factor: 9.043

6.  Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen.

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Journal:  PLoS Genet       Date:  2018-05-21       Impact factor: 5.917

7.  The mRNA degradation factor Xrn1 regulates transcription elongation in parallel to Ccr4.

Authors:  Victoria Begley; Daniel Corzo; Antonio Jordán-Pla; Abel Cuevas-Bermúdez; Lola de Miguel-Jiménez; David Pérez-Aguado; Mercedes Machuca-Ostos; Francisco Navarro; María José Chávez; José E Pérez-Ortín; Sebastián Chávez
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

8.  The Association of Rpb4 with RNA Polymerase II Depends on CTD Ser5P Phosphatase Rtr1 and Influences mRNA Decay in Saccharomyces cerevisiae.

Authors:  Ana I Garrido-Godino; Abel Cuevas-Bermúdez; Francisco Gutiérrez-Santiago; Maria Del Carmen Mota-Trujillo; Francisco Navarro
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  8 in total

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