Literature DB >> 27646397

Pyrosequencing Analysis of Norovirus Genogroup II Distribution in Sewage and Oysters: First Detection of GII.17 Kawasaki 2014 in Oysters.

Jian Pu1, Shinobu Kazama2, Takayuki Miura2, Nabila Dhyan Azraini3, Yoshimitsu Konta2, Hiroaki Ito4, You Ueki5, Ermaya Eka Cahyaningrum3, Tatsuo Omura2, Toru Watanabe6.   

Abstract

Norovirus GII.3, GII.4, and GII.17 were detected using pyrosequencing in sewage and oysters in January and February 2015, in Japan. The strains in sewage and oyster samples were genetically identical or similar, predominant strains belonging to GII.17 Kawasaki 2014 lineage. This is the first report of GII.17 Kawasaki 2014 in oysters.

Entities:  

Keywords:  Norovirus; Oyster; Pyrosequencing; Sewage

Mesh：

Substances：

Year:  2016        PMID： 27646397     DOI： 10.1007/s12560-016-9261-5

Source DB:  PubMed          Journal:  Food Environ Virol        ISSN： 1867-0334            Impact factor:   2.778


  7 in total

1.  Genetic analyses of GII.17 norovirus strains in diarrheal disease outbreaks from December 2014 to March 2015 in Japan reveal a novel polymerase sequence and amino acid substitutions in the capsid region.

Authors:  Y Matsushima; M Ishikawa; T Shimizu; A Komane; S Kasuo; M Shinohara; K Nagasawa; H Kimura; A Ryo; N Okabe; K Haga; Y H Doan; K Katayama; H Shimizu
Journal:  Euro Surveill       Date:  2015-07-02

2.  Concentration of norovirus during wastewater treatment and its impact on oyster contamination.

Authors:  John Flannery; Sinéad Keaveney; Paulina Rajko-Nenow; Vincent O'Flaherty; William Doré
Journal:  Appl Environ Microbiol       Date:  2012-02-24       Impact factor: 4.792

3.  Molecular identification of emergent GII.P17-GII.17 norovirus genotype, Romania, 2015.

Authors:  Sorin Dinu; Mariana Nagy; Dana Gabriela Negru; Emilian Damian Popovici; Lavinia Zota; Gabriela Oprișan
Journal:  Euro Surveill       Date:  2016

4.  Temporal dynamics of norovirus determined through monitoring of municipal wastewater by pyrosequencing and virological surveillance of gastroenteritis cases.

Authors:  Shinobu Kazama; Yoshifumi Masago; Kentaro Tohma; Nao Souma; Toshifumi Imagawa; Akira Suzuki; Xiaofang Liu; Mayuko Saito; Hitoshi Oshitani; Tatsuo Omura
Journal:  Water Res       Date:  2015-10-19       Impact factor: 11.236

5.  Emergence of a novel GII.17 norovirus – End of the GII.4 era?

Authors:  M de Graaf; J van Beek; H Vennema; A T Podkolzin; J Hewitt; F Bucardo; K Templeton; J Mans; J Nordgren; G Reuter; M Lynch; L D Rasmussen; N Iritani; M C Chan; V Martella; K Ambert-Balay; J Vinjé; P A White; M P Koopmans
Journal:  Euro Surveill       Date:  2015-07-02

6.  Norovirus genotypes present in oysters and in effluent from a wastewater treatment plant during the seasonal peak of infections in Ireland in 2010.

Authors:  Paulina Rajko-Nenow; Allison Waters; Sinéad Keaveney; John Flannery; Gráinne Tuite; Suzie Coughlan; Vincent O'Flaherty; William Doré
Journal:  Appl Environ Microbiol       Date:  2013-02-08       Impact factor: 4.792

7.  Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII.17 variant in late 2014.

Authors:  Martin C W Chan; Nelson Lee; Tin-Nok Hung; Kirsty Kwok; Kelton Cheung; Edith K Y Tin; Raymond W M Lai; E Anthony S Nelson; Ting F Leung; Paul K S Chan
Journal:  Nat Commun       Date:  2015-12-02       Impact factor: 14.919
  7 in total
  11 in total

1.  Genetic Diversity Among Genogroup II Noroviruses and Progressive Emergence of GII.17 in Wastewaters in Italy (2011-2016) Revealed by Next-Generation and Sanger Sequencing.

Authors:  E Suffredini; M Iaconelli; M Equestre; B Valdazo-González; A R Ciccaglione; C Marcantonio; S Della Libera; F Bignami; G La Rosa
Journal:  Food Environ Virol       Date:  2017-11-28       Impact factor: 2.778

2.  Oyster Contamination with Human Noroviruses Impacted by Urban Drainage and Seasonal Flooding in Vietnam.

Authors:  Gia Thanh Nguyen; Jian Pu; Takayuki Miura; Hiroaki Ito; Shinobu Kazama; Yoshimitsu Konta; An Van Le; Toru Watanabe
Journal:  Food Environ Virol       Date:  2017-11-07       Impact factor: 2.778

3.  Comprehensive Study on Enteric Viruses and Indicators in Surface Water in Kyoto, Japan, During 2014-2015 Season.

Authors:  Akihiko Hata; Seiya Hanamoto; Masaru Ihara; Yuya Shirasaka; Naoyuki Yamashita; Hiroaki Tanaka
Journal:  Food Environ Virol       Date:  2018-08-27       Impact factor: 2.778

4.  Detection of Norovirus GII.17 Kawasaki 2014 in Shellfish, Marine Water and Underwater Sewage Discharges in Italy.

Authors:  G La Rosa; S Della Libera; M Iaconelli; Y T R Proroga; D De Medici; V Martella; E Suffredini
Journal:  Food Environ Virol       Date:  2017-03-03       Impact factor: 2.778

5.  Detection of Norovirus Recombinant GII.2[P16] Strains in Oysters in Thailand.

Authors:  Leera Kittigul; Kannika Pombubpa; Kitwadee Rupprom; Jinthapha Thasiri
Journal:  Food Environ Virol       Date:  2022-01-24       Impact factor: 2.778

6.  Norovirus GII.17 Associated with a Foodborne Acute Gastroenteritis Outbreak in Brazil, 2016.

Authors:  Juliana da Silva Ribeiro de Andrade; Tulio Machado Fumian; José Paulo Gagliardi Leite; Matheus Ribeiro de Assis; Alexandre Madi Fialho; Sergio Mouta; Cristiane Mendes Pereira Santiago; Marize Pereira Miagostovich
Journal:  Food Environ Virol       Date:  2017-11-17       Impact factor: 2.778

7.  Pandemic GII.4 Sydney and Epidemic GII.17 Kawasaki308 Noroviruses Display Distinct Specificities for Histo-Blood Group Antigens Leading to Different Transmission Vector Dynamics in Pacific Oysters.

Authors:  Vasily Morozov; Franz-Georg Hanisch; K Mathias Wegner; Horst Schroten
Journal:  Front Microbiol       Date:  2018-11-27       Impact factor: 5.640

8.  Weekly Variation of Rotavirus A Concentrations in Sewage and Oysters in Japan, 2014-2016.

Authors:  Erika Ito; Jian Pu; Takayuki Miura; Shinobu Kazama; Masateru Nishiyama; Hiroaki Ito; Yoshimitsu Konta; Gia Thanh Nguyen; Tatsuo Omura; Toru Watanabe
Journal:  Pathogens       Date:  2019-06-26

9.  Microfluidic PCR Amplification and MiSeq Amplicon Sequencing Techniques for High-Throughput Detection and Genotyping of Human Pathogenic RNA Viruses in Human Feces, Sewage, and Oysters.

Authors:  Mamoru Oshiki; Takayuki Miura; Shinobu Kazama; Takahiro Segawa; Satoshi Ishii; Masashi Hatamoto; Takashi Yamaguchi; Kengo Kubota; Akinori Iguchi; Tadashi Tagawa; Tsutomu Okubo; Shigeki Uemura; Hideki Harada; Naohiro Kobayashi; Nobuo Araki; Daisuke Sano
Journal:  Front Microbiol       Date:  2018-04-27       Impact factor: 5.640

10.  Phylogenetic lineage of GII.17 norovirus identified among children in South-South, Nigeria.

Authors:  Favour Osazuwa; Hailey Seth Grobler; William Johnson
Journal:  BMC Res Notes       Date:  2020-07-22
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