| Literature DB >> 27637086 |
Jieli Du1,2, Wanlin Liu2, Tianbo Jin3, Zhenqun Zhao2, Rui Bai2, Huiqin Xue2, Junyu Chen1,2, Mingqi Sun2, Xiyang Zhang3, Guoqiang Wang2, Jianzhong Wang2.
Abstract
Osteonecrosis of the femoral head (ONFH) is a common hip joint disease, and steroid-induced ONFH accounts for a large number of cases. Here, we examined eight previously-identified single-nucleotide polymorphisms (SNPs) in the MPP2 and MPP9 genes of 285 steroid-induced ONFH patients and 507 healthy controls from northern China to determine whether these SNPs were associated with the risk of developing steroid-induced ONFH. Chi-squared tests and genetic model and haplotype analyses were used to evaluate associations. The rs2274755 SNP in MMP9 was associated with a decreased risk of steroid-induced ONFH in the allele, dominant, and additive models. Additionally, the "CGC" MMP9 haplotype was associated with a 0.69-fold decrease in the risk of steroid-induced ONFH. Although additional, larger population-based studies are needed to confirm these findings, our results reveal for the first time an association between a MMP9 SNP at the rs2274755 locus and a decreased risk of steroid-induced ONFH in a northern Chinese population.Entities:
Keywords: MMP2; MMP9; association study; osteonecrosis of the femoral head; single nucleotide polymorphisms
Mesh:
Substances:
Year: 2016 PMID: 27637086 PMCID: PMC5356565 DOI: 10.18632/oncotarget.12034
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Characteristics of cases and controls in this study
| Variable(s) | Case ( | Control ( | |
|---|---|---|---|
| Sex N(%) | < 0.001 | ||
| Male | 173 (60.7) | 396 (78.1) | |
| Female | 112(39.3) | 111 (21.9) | |
| Age, year (mean ± SD) | 41.88 ± 12.79 | 47.43 ± 9.74 | < 0.001 |
Two-sided Chi-squared test.
Independent samples t test.
Allele frequencies in cases and controls and odds ratio estimates for steroid-induced ONFH
| SNP ID | Gene | Position | Alleles A/B | MAF | ORs | 95% CI | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| case | control | |||||||||
| rs1053605 | MMP2 | 16q12.2 | T/C | 0.11 | 0.15 | 0.843 | 0.75 | 0.54 | 1.04 | 0.085 |
| rs243849 | MMP2 | 16q12.2 | T/C | 0.21 | 0.20 | 1.000 | 1.03 | 0.78 | 1.35 | 0.858 |
| rs243847 | MMP2 | 16q12.2 | C/T | 0.82 | 0.68 | 0.117 | 1.20 | 0.97 | 1.47 | 0.090 |
| rs243832 | MMP2 | 16q12.2 | C/G | 0.57 | 0.62 | 0.347 | 0.92 | 0.74 | 1.13 | 0.424 |
| rs7201 | MMP2 | 16q12.2 | C/A | 0.37 | 0.34 | 0.349 | 1.07 | 0.85 | 1.36 | 0.551 |
| rs3918249 | MMP9 | 20q13.12 | T/C | 0.44 | 0.48 | 0.613 | 0.93 | 0.75 | 1.16 | 0.525 |
| rs2274755 | MMP9 | 20q13.12 | T/G | 0.12 | 0.18 | 0.729 | 0.70 | 0.51 | 0.96 | 0.025 |
| rs3918254 | MMP9 | 20q13.12 | T/C | 0.28 | 0.23 | 0.664 | 1.19 | 0.93 | 1.54 | 0.173 |
SNP single nucleotide polymorphism, HWE Hardy-Weinberg equilibrium, OR odds ratio, 95% CI 95% confidence interval, MAF minor allele frequency.
p ≤ 0.05.
Bonferroni's multiple adjustment was applied to the level of significance, which was set at p ≤ 0.00104 (0.05/48).
p was calculated by exact test.
p was calculated by Pearson Chi-squared test.
Genotypic model analysis of relationship between SNPs and steroid-induced ONFH risk
| Model | Genotype | Group = control | Group = Hormone | Without Adjustment | With Adjustment | ||
|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | ||||||
| Codominant | G/G | 364 (71.8%) | 226 (79.3%) | 1 | 1 | ||
| G/T | 133 (26.2%) | 55 (19.3%) | 0.67 (0.47–0.95) | 0.063 | 0.69 (0.48–1.00) | 0.100 | |
| T/T | 10 (2%) | 4 (1.4%) | 0.64 (0.20–2.08) | 0.56 (0.17–1.92) | |||
| Dominant | G/G | 364 (71.8%) | 226 (79.3%) | 1 | 1 | ||
| 0.019 | 0.034 | ||||||
| G/T-T/T | 143 (28.2%) | 59 (20.7%) | 0.66 (0.47–0.94) | 0.68 (0.47–0.98) | |||
| Recessive | G/G-G/T | 497 (98%) | 281 (98.6%) | 1 | 1 | ||
| 0.550 | 0.420 | ||||||
| T/T | 10 (2%) | 4 (1.4%) | 0.71 (0.22–2.28) | 0.61 (0.18–2.08) | |||
| Overdominant | G/G-T/T | 374 (73.8%) | 230 (80.7%) | 1 | 1 | ||
| 0.026 | 0.055 | ||||||
| G/T | 133 (26.2%) | 55 (19.3%) | 0.67 (0.47–0.96) | 0.70 (0.48–1.01) | |||
| Log-additive | — | — | — | 0.70 (0.51–0.96) | 0.022 | 0.70 (0.51–0.98) | 0.033 |
p ≤ 0.05.
Bonferroni's multiple adjustment was applied to the level of significance, which was set at p ≤ 0.00104 (0.05/48).
p values were calculated by Wald test by unconditional logistic regression adjusted for age and gender.
Figure 1Linkage disequilibrium (LD) plots containing three SNPs from MMP9
Red squares display statistically significant associations between a pair of SNPs, as measured by D'; darker shades of red indicate higher D'
Figure 2Linkage disequilibrium (LD) plots containing five SNPs from MMP2
Red squares display statistically significant associations between a pair of SNPs, as measured by D'; darker shades of red indicate higher D'.
The haplotype frequencies of MMP9 polymorphisms and their association with steroid-induced ONFH risk
| Haplotype | Without Adjustment | With Adjustment | ||||||
|---|---|---|---|---|---|---|---|---|
| rs3918249 | rs2274755 | rs3918254 | Freq | OR (95% CI) | OR (95% CI) | |||
| 1 | C | G | C | 0.3491 | 1 | — | 1 | — |
| 2 | T | G | C | 0.3169 | 0.88 (0.68–1.13) | 0.310 | 0.91 (0.70–1.18) | 0.470 |
| 3 | C | G | T | 0.1976 | 1.06 (0.80–1.42) | 0.680 | 1.03 (0.76–1.40) | 0.850 |
| 4 | C | T | C | 0.1364 | 0.67 (0.48–0.95) | 0.026 | 0.69 (0.48–0.98) | 0.039 |
p value were calculated by unconditional logistic regression.
p values were calculated by unconditional logistic regression adjusted for age and gender.
p ≤ 0.05 indicates statistical significance.
Primers used for this study
| SNP_ID | 1st-PCRP | 2nd-PCRP | UEP_SEQ |
|---|---|---|---|
| rs1053605 | ACGTTGGATGCTCAAA GTTGTAGGTGGTGG | ACGTTGGATGAAGGAGTA CAACAGCTGCAC | AACAGCTGCACTGATAC |
| rs243849 | ACGTTGGATGTACCTTG GTCAGGGCAGAAG | ACGTTGGATGAGTGACGG AAAGATGTGGTG | ACAGCCAACTACGATGA |
| rs243847 | ACGTTGGATGAAGACAA GAGCAGTGACCCC | ACGTTGGATGCCAAAATC AGACCCTGGTAG | ccTGCTGCTACTCACCTCC |
| rs243832 | ACGTTGGATGCCTATGCC AGGCAGAAATTC | ACGTTGGATGGAGAAAGA AGAGACCGTGAC | ACATTCTGGCACACAGAAG |
| rs7201 | ACGTTGGATGTCCAATCC CACCAACCCTCA | ACGTTGGATGGCAGGGCTG CGTTGAAAATA | aAGGGCTGCGTTGAAAATATCAAAG |
| rs3918249 | ACGTTGGATGAAGCACT GGTGTCTGGAAAG | ACGTTGGATGGATTACAAG TGTGAGCCGTC | gaaGTCATGCCCAGCAGGGACTA |
| rs2274755 | ACGTTGGATGGGGAGAG AATGAAGGGAATC | ACGTTGGATGTTCGACGAT GACGAGTTGTG | gCTGGGCAAGGGCGTCGGT |
| rs3918254 | ACGTTGGATGTCTTCGG CTTCTGCCCGAC | ACGTTGGATGCAATACATG ATGAGAGGGCG | CTGGTAGACAGGGTGGA |