| Literature DB >> 29137306 |
Yuan Liu1,2, Yanfei Jia2, Yuju Cao3, Yan Zhao2, Jieli Du1,2, Feimeng An1,2, Yuxin Qi1,2, Xue Feng4, Tianbo Jin5, Jianping Shi6, Jianzhong Wang2.
Abstract
Non-traumatic osteonecrosis of femoral head (ONFH) is an orthopedic refractory disease with escalating morbidity in Chinese Han population. In our case-control study, we examined eight previously identified MMP9 single-nucleotide polymorphisms (SNPs) in 585 non-traumatic ONFH patients and 507 healthy individuals from northern China to determine whether these SNPs associated with the risk of developing non-traumatic ONFH. Genetic model and haplotype analyses were used to evaluate the association between SNPs and non-traumatic ONFH. MMP9 rs2274755 (OR, 0.740; 95% CI, 0.578-0.949; p = 0.017) was associated with a reduced risk of non-traumatic ONFH. After adjusting for age and gender, the logistic regression results showed that rs2274755 associated with a lower risk of non-traumatic ONFH in the dominant (OR=0.71, 95% CI: 0.54-0.94, p=0.016), overdominant (OR=0.73, 95% CI: 0.55-0.96, p=0.026) and log-additive (OR=0.74740; 95% CI, 0.578-0.949; p=0.017) models. In addition, the "TGC" haplotype of rs2274755 was associated with a 0.79-fold decrease in risk while the "CTC" haplotype associated with a 0.65-fold decrease risk of the non-traumatic ONFH. These results provide evidence that the MMP9 SNP at the rs2274755 locus is associated with a decreased risk of non-traumatic ONFH in a Chinese Han population.Entities:
Keywords: MMP2; MMP9; association study; non-traumatic osteonecrosis of the femoral head; single nucleotide polymorphisms
Year: 2017 PMID: 29137306 PMCID: PMC5669932 DOI: 10.18632/oncotarget.20463
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Characteristics of cases and controls in male individuals
| Variable | Cases | Controls | |
|---|---|---|---|
| n=585 | n=507 | ||
| Alcohol | 285 | ||
| Steroids | 300 | ||
| Sex | 0.293a | ||
| Male | 472(80. 7%) | 396(78.1%) | |
| Female | 113(19.3%) | 111(21.9%) | |
| Age, year (mean ± SD) | 42.61±12.951 | 47.43±9.739 | <0.001b |
p ≤ 0.05 indicates statistical significance.
ap Two-sided Chi-squared test.
bp Independent samples t test.
Primers used for this study
| SNP ID | 1st-PCR primer sequences | 2nd-PCR primer sequences | UEP sequences |
|---|---|---|---|
| rs3918249 | ACGTTGGATGAAGCACTGGTGTCTGGAAAG | ACGTTGGATGGATTACAAGTGTGAGCCGTC | gaaGTCATGCCCAGCAGGGACTA |
| rs2274755 | ACGTTGGATGGGGAGAGAATGAAGGGAATC | ACGTTGGATGTTCGACGATGACGAGTTGTG | gCTGGGCAAGGGCGTCGGT |
| rs3918254 | ACGTTGGATGTCTTCGGCTTCTGCCCGAC | ACGTTGGATGCAATACATGATGAGAGGGCG | CTGGTAGACAGGGTGGA |
| rs1053605 | ACGTTGGATGCGTAGCTGCTCCATAAATAG | ACGTTGGATGACAGAGAGAATTTCAGTCCG | gaCGGTAAGCAATGTAATTCATTTCA |
| rs243849 | ACGTTGGATGCTCAAAGTTGTAGGTGGTGG | ACGTTGGATGAAGGAGTACAACAGCTGCAC | AACAGCTGCACTGATAC |
| rs243847 | ACGTTGGATGTACCTTGGTCAGGGCAGAAG | ACGTTGGATGAGTGACGGAAAGATGTGGTG | ACAGCCAACTACGATGA |
| rs243832 | ACGTTGGATGAAGACAAGAGCAGTGACCCC | ACGTTGGATGCCAAAATCAGACCCTGGTAG | ccTGCTGCTACTCACCTCC |
| rs7201 | ACGTTGGATGTCCAATCCCACCAACCCTCA | ACGTTGGATGGCAGGGCTGCGTTGAAAATA | aAGGGCTGCGTTGAAAATATCAAAG |
Allele frequencies in cases and controls and odds ratio estimates for non-traumatic ONFH
| SNP | Gene | Locus | Alleles | MAF | HWE | ORs | 95%CI | ||
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||
| rs3918249 | 20q13.12 | T/C | 0.297 | 0.322 | 0.613 | 0.886 | 0.739-1.062 | 0.191 | |
| rs2274755 | 20q13.12 | T/G | 0.116 | 0.151 | 0.729 | 0.740 | 0.578-0.949 | 0.017* | |
| rs3918254 | 20q13.12 | T/C | 0.203 | 0.187 | 0.664 | 1.102 | 0.891-1.363 | 0.372 | |
| rs1053605 | 16q12.2 | T/C | 0.112 | 0.129 | 0.843 | 0.850 | 0.656-1.100 | 0.217 | |
| rs243849 | 16q12.2 | T/C | 0.191 | 0.167 | 1.00 | 1.177 | 0.945-1.468 | 0.146 | |
| rs243847 | 16q12.2 | C/T | 0.415 | 0.405 | 0.117 | 1.042 | 0.879-1.237 | 0.634 | |
| rs243832 | 16q12.2 | C/G | 0.362 | 0.382 | 0.347 | 0.921 | 0.774-1.096 | 0.353 | |
| rs7201 | 16q12.2 | C/A | 0.245 | 0.255 | 0.349 | 0.950 | 0.782-1.154 | 0.603 | |
SNP: single nucleotide polymorphism, HWE: Hardy-Weinberg equilibrium, OR: odds ratio, 95% CI: 95% confidence interval, MAF: minor allele frequency.
ap was calculated by fisher's exact test.
bp was calculated by Pearson Chi-squared test.
A/B=minor/major alleles.
The SNPs were excluded at HWE P level of 5%.
Genotypic model analysis of relationship between rs2274755 and ONFH risk
| Model | Genotype | Control | Case | Without adjustment | With adjustment | AIC | BIC | ||
|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | ||||||||
| G/G | 364 (71.8%) | 457 (78.1%) | 1 | 0.053 | 1 | 0.04* | 1508.4 | 1523.4 | |
| G/T | 133 (26.2%) | 120 (20.5%) | 0.72 (0.54-0.95) | 0.70 (0.52-0.93)* | |||||
| T/T | 10 (2%) | 8 (1.4%) | 0.64 (0.25-1.63) | 0.65 (0.25-1.68) | |||||
| G/G | 364 (71.8%) | 457 (78.1%) | 1 | 0.016* | 1 | 0.011* | 1506.4 | 1516.4 | |
| G/T-T/T | 143 (28.2%) | 128 (21.9%) | 0.71 (0.54-0.94) | 0.70 (0.52-0.92)* | |||||
| G/G-G/T | 497 (98%) | 577 (98.6%) | 1 | 0.43 | 1 | 0.47 | 1511.6 | 1521.6 | |
| T/T | 10 (2%) | 8 (1.4%) | 0.69 (0.27-1.76) | 0.70 (0.27-1.83) | |||||
| G/G-T/T | 374 (73.8%) | 465 (79.5%) | 1 | 0.026* | 1 | 0.018* | 1507.3 | 1517.3 | |
| G/T | 133 (26.2%) | 120 (20.5%) | 0.73 (0.55-0.96) | 0.71 (0.53-0.94)* | |||||
| — | — | — | 0.74 (0.57-0.95) | 0.017* | 0.72 (0.56-0.94)* | 0.013* | 1506.5 | 1516.5 | |
p* ≤ 0.05 indicates statistical significance.
p values were calculated by Wald test by unconditional logistic regression adjusted for age and gender.
AIC = Akaike Information Criterion.
BIC = Bayesian Information Criterion.
Figure 1Linkage disequilibrium (LD) plots containing three SNPs from MMP9
Red squares display statistically significant associations between a pair of SNPs, as measured by D’; darker shades of red indicate higher D’.
The haplotype frequencies of MMP9 polymorphisms and their association with non-traumatic ONFH risk
| Haplotype | Freq | ORa (95% CI) | ORb(95% CI) | ||||
|---|---|---|---|---|---|---|---|
| rs3918249 | rs2274755 | rs3918254 | |||||
| 9 | 5 | 4 | |||||
| C | G | C | 0.3636 | 1 | 1 | — | — |
| T | G | C | 0.3086 | 0.81 (0.66 - 1.00) | 0.79 (0.64 - 0.97) | 0.047* | 0.028* |
| C | G | T | 0.1955 | 0.96 (0.75 - 1.22) | 0.92 (0.72 - 1.18) | 0.72 | 0.52 |
| C | T | C | 0.1323 | 0.68 (0.52 - 0.89) | 0.65 (0.49 - 0.86) | 0.0051 | 0.0027* |
*p ≤ 0.05 indicates statistical significance.
a= crude analysis data.
b= adjusted by Gender and Age.