Literature DB >> 27634413

Virus Matryoshka: A Bacteriophage Particle-Guided Molecular Assembly Approach to a Monodisperse Model of the Immature Human Immunodeficiency Virus.

Pooja Saxena1, Li He2, Andrey Malyutin1, Siddhartha A K Datta3, Alan Rein3, Kevin M Bond1, Martin F Jarrold1, Alessandro Spilotros4, Dmitri Svergun4, Trevor Douglas1, Bogdan Dragnea1.   

Abstract

Immature human immunodeficiency virus type 1 (HIV-1) is approximately spherical, but is constructed from a hexagonal lattice of the Gag protein. As a hexagonal lattice is necessarily flat, the local symmetry cannot be maintained throughout the structure. This geometrical frustration presumably results in bending stress. In natural particles, the stress is relieved by incorporation of packing defects, but the magnitude of this stress and its significance for the particles is not known. In order to control this stress, we have now assembled the Gag protein on a quasi-spherical template derived from bacteriophage P22. This template is monodisperse in size and electron-transparent, enabling the use of cryo-electron microscopy in structural studies. These templated assemblies are far less polydisperse than any previously described virus-like particles (and, while constructed according to the same lattice as natural particles, contain almost no packing defects). This system gives us the ability to study the relationship between packing defects, curvature and elastic energy, and thermodynamic stability. As Gag is bound to the P22 template by single-stranded DNA, treatment of the particles with DNase enabled us to determine the intrinsic radius of curvature of a Gag lattice, unconstrained by DNA or a template. We found that this intrinsic radius is far larger than that of a virion or P22-templated particle. We conclude that Gag is under elastic strain in a particle; this has important implications for the kinetics of shell growth, the stability of the shell, and the type of defects it will assume as it grows.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  HIV; self-assembly; strain; virus shells

Year:  2016        PMID: 27634413      PMCID: PMC6810630          DOI: 10.1002/smll.201601712

Source DB:  PubMed          Journal:  Small        ISSN: 1613-6810            Impact factor:   13.281


  63 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

Review 2.  How does your virus grow? Understanding and interfering with virus assembly.

Authors:  Adam Zlotnick; Stephen J Stray
Journal:  Trends Biotechnol       Date:  2003-12       Impact factor: 19.536

3.  Virus shapes and buckling transitions in spherical shells.

Authors:  Jack Lidmar; Leonid Mirny; David R Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-25

4.  Structure and assembly of immature HIV.

Authors:  J A G Briggs; J D Riches; B Glass; V Bartonova; G Zanetti; H-G Kräusslich
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

5.  Self-assembly of self-limiting monodisperse supraparticles from polydisperse nanoparticles.

Authors:  Yunsheng Xia; Trung Dac Nguyen; Ming Yang; Byeongdu Lee; Aaron Santos; Paul Podsiadlo; Zhiyong Tang; Sharon C Glotzer; Nicholas A Kotov
Journal:  Nat Nanotechnol       Date:  2011-08-21       Impact factor: 39.213

6.  Cryo-electron microscopy of tubular arrays of HIV-1 Gag resolves structures essential for immature virus assembly.

Authors:  Tanmay A M Bharat; Luis R Castillo Menendez; Wim J H Hagen; Vanda Lux; Sebastien Igonet; Martin Schorb; Florian K M Schur; Hans-Georg Kräusslich; John A G Briggs
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-19       Impact factor: 11.205

7.  Elastic instability of a crystal growing on a curved surface.

Authors:  Guangnan Meng; Jayson Paulose; David R Nelson; Vinothan N Manoharan
Journal:  Science       Date:  2014-02-07       Impact factor: 47.728

8.  Synthesis of peptide-oligonucleotide conjugates using a heterobifunctional crosslinker.

Authors:  Berea A R Williams; John C Chaput
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2010-09

9.  Cryo-electron microscopy reveals ordered domains in the immature HIV-1 particle.

Authors:  S D Fuller; T Wilk; B E Gowen; H G Kräusslich; V M Vogt
Journal:  Curr Biol       Date:  1997-10-01       Impact factor: 10.834

10.  Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY).

Authors:  Clement E Blanchet; Alessandro Spilotros; Frank Schwemmer; Melissa A Graewert; Alexey Kikhney; Cy M Jeffries; Daniel Franke; Daniel Mark; Roland Zengerle; Florent Cipriani; Stefan Fiedler; Manfred Roessle; Dmitri I Svergun
Journal:  J Appl Crystallogr       Date:  2015-03-12       Impact factor: 3.304

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  3 in total

1.  Beyond icosahedral symmetry in packings of proteins in spherical shells.

Authors:  Majid Mosayebi; Deborah K Shoemark; Jordan M Fletcher; Richard B Sessions; Noah Linden; Derek N Woolfson; Tanniemola B Liverpool
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-08       Impact factor: 11.205

2.  Defects and Chirality in the Nanoparticle-Directed Assembly of Spherocylindrical Shells of Virus Coat Proteins.

Authors:  Cheng Zeng; Guillermo Rodriguez Lázaro; Irina B Tsvetkova; Michael F Hagan; Bogdan Dragnea
Journal:  ACS Nano       Date:  2018-04-25       Impact factor: 15.881

3.  Analytical Techniques to Characterize the Structure, Properties, and Assembly of Virus Capsids.

Authors:  Panagiotis Kondylis; Christopher J Schlicksup; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2018-12-03       Impact factor: 6.986

  3 in total

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