Literature DB >> 27624936

Biophysical Characterization of a Thermoalkaliphilic Molecular Motor with a High Stepping Torque Gives Insight into Evolutionary ATP Synthase Adaptation.

Duncan G G McMillan1, Rikiya Watanabe2, Hiroshi Ueno2, Gregory M Cook3, Hiroyuki Noji4.   

Abstract

F1F0 ATP synthases are bidirectional molecular motors that translocate protons across the cell membrane by either synthesizing or hydrolyzing ATP. Alkaliphile ATP synthases are highly adapted, performing oxidative phosphorylation at high pH against an inverted pH gradient (acidin/alkalineout). Unlike mesophilic ATP synthases, alkaliphilic enzymes have tightly regulated ATP hydrolysis activity, which can be relieved in the presence of lauryldimethylamine oxide. Here, we characterized the rotary dynamics of the Caldalkalibacillus thermarum TA2.A1 F1 ATPase (TA2F1) with two forms of single molecule analysis, a magnetic bead duplex and a gold nanoparticle. TA2F1 rotated in a counterclockwise direction in both systems, adhering to Michaelis-Menten kinetics with a maximum rotation rate (Vmax) of 112.4 revolutions/s. TA2F1 displayed 120° unitary steps coupled with ATP hydrolysis. Torque measurements revealed the highest torque (52.4 piconewtons) derived from an F1 molecule using fluctuation theorem. The implications of high torque in terms of extreme environment adaptation are discussed.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  ATP synthase; F1F0-ATPase; adaptation; enzyme kinetics; enzyme mechanism; respiratory chain; rotation; single molecule biophysics; thermoalkaliphile; torque

Mesh:

Substances:

Year:  2016        PMID: 27624936      PMCID: PMC5104922          DOI: 10.1074/jbc.M116.743633

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  77 in total

1.  Rotation of Escherichia coli F(1)-ATPase.

Authors:  H Noji; K Häsler; W Junge; K Kinosita; M Yoshida; S Engelbrecht
Journal:  Biochem Biophys Res Commun       Date:  1999-07-14       Impact factor: 3.575

2.  Fluctuation theorem applied to F1-ATPase.

Authors:  Kumiko Hayashi; Hiroshi Ueno; Ryota Iino; Hiroyuki Noji
Journal:  Phys Rev Lett       Date:  2010-05-28       Impact factor: 9.161

3.  One rotary mechanism for F1-ATPase over ATP concentrations from millimolar down to nanomolar.

Authors:  Naoyoshi Sakaki; Rieko Shimo-Kon; Kengo Adachi; Hiroyasu Itoh; Shou Furuike; Eiro Muneyuki; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Biophys J       Date:  2004-12-30       Impact factor: 4.033

4.  Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae.

Authors:  Takeshi Murata; Ichiro Yamato; Yoshimi Kakinuma; Andrew G W Leslie; John E Walker
Journal:  Science       Date:  2005-03-31       Impact factor: 47.728

5.  Constant c10 ring stoichiometry in the Escherichia coli ATP synthase analyzed by cross-linking.

Authors:  Britta Ballhausen; Karlheinz Altendorf; Gabriele Deckers-Hebestreit
Journal:  J Bacteriol       Date:  2009-01-30       Impact factor: 3.490

6.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

7.  Oxidative phosphorylation by ADP + P(i)-loaded membrane vesicles of alkaliphilic Bacillus firmus OF4.

Authors:  A A Guffanti; T A Krulwich
Journal:  J Biol Chem       Date:  1994-08-26       Impact factor: 5.157

8.  Molecular architecture of the undecameric rotor of a bacterial Na+-ATP synthase.

Authors:  Janet Vonck; Tassilo Krug von Nidda; Thomas Meier; Ulrich Matthey; Deryck J Mills; Werner Kühlbrandt; Peter Dimroth
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

9.  Nonfermentative thermoalkaliphilic growth is restricted to alkaline environments.

Authors:  Duncan G G McMillan; Stefanie Keis; Michael Berney; Gregory M Cook
Journal:  Appl Environ Microbiol       Date:  2009-10-23       Impact factor: 4.792

10.  Temperature-sensitive reaction intermediate of F1-ATPase.

Authors:  Rikiya Watanabe; Ryota Iino; Katsuya Shimabukuro; Masasuke Yoshida; Hiroyuki Noji
Journal:  EMBO Rep       Date:  2007-12-07       Impact factor: 8.807

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  11 in total

Review 1.  Control of rotation of the F1FO-ATP synthase nanomotor by an inhibitory α-helix from unfolded ε or intrinsically disordered ζ and IF1 proteins.

Authors:  Francisco Mendoza-Hoffmann; Mariel Zarco-Zavala; Raquel Ortega; José J García-Trejo
Journal:  J Bioenerg Biomembr       Date:  2018-09-28       Impact factor: 2.945

Review 2.  Application of the fluctuation theorem to motor proteins: from F1-ATPase to axonal cargo transport by kinesin and dynein.

Authors:  Kumiko Hayashi
Journal:  Biophys Rev       Date:  2018-07-17

Review 3.  How Does F1-ATPase Generate Torque?: Analysis From Cryo-Electron Microscopy and Rotational Catalysis of Thermophilic F1.

Authors:  Hiroyuki Noji; Hiroshi Ueno
Journal:  Front Microbiol       Date:  2022-05-06       Impact factor: 5.640

Review 4.  Catalytic robustness and torque generation of the F1-ATPase.

Authors:  Hiroyuki Noji; Hiroshi Ueno; Duncan G G McMillan
Journal:  Biophys Rev       Date:  2017-03-25

5.  Purified F-ATP synthase forms a Ca2+-dependent high-conductance channel matching the mitochondrial permeability transition pore.

Authors:  Andrea Urbani; Valentina Giorgio; Andrea Carrer; Cinzia Franchin; Giorgio Arrigoni; Chimari Jiko; Kazuhiro Abe; Shintaro Maeda; Kyoko Shinzawa-Itoh; Janna F M Bogers; Duncan G G McMillan; Christoph Gerle; Ildikò Szabò; Paolo Bernardi
Journal:  Nat Commun       Date:  2019-09-25       Impact factor: 14.919

6.  Correlation between the numbers of rotation steps in the ATPase and proton-conducting domains of F- and V-ATPases.

Authors:  Hiroyuki Noji; Hiroshi Ueno; Ryohei Kobayashi
Journal:  Biophys Rev       Date:  2020-04-08

Review 7.  Structure and dynamics of rotary V1 motor.

Authors:  Hiroshi Ueno; Kano Suzuki; Takeshi Murata
Journal:  Cell Mol Life Sci       Date:  2018-01-31       Impact factor: 9.261

Review 8.  Insights into the regulatory function of the ɛ subunit from bacterial F-type ATP synthases: a comparison of structural, biochemical and biophysical data.

Authors:  Alexander Krah; Mariel Zarco-Zavala; Duncan G G McMillan
Journal:  Open Biol       Date:  2018-05       Impact factor: 6.411

9.  Single mutations in the ε subunit from thermophilic Bacillus PS3 generate a high binding affinity site for ATP.

Authors:  Alexander Krah; Peter J Bond
Journal:  PeerJ       Date:  2018-09-05       Impact factor: 2.984

10.  Rotary catalysis of bovine mitochondrial F1-ATPase studied by single-molecule experiments.

Authors:  Ryohei Kobayashi; Hiroshi Ueno; Chun-Biu Li; Hiroyuki Noji
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-02       Impact factor: 11.205

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